Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BOP93_RS23180 Genome accession   NZ_CP018049
Coordinates   5142472..5143839 (-) Length   455 a.a.
NCBI ID   WP_032884669.1    Uniprot ID   A0A031J688
Organism   Pseudomonas orientalis strain F9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5137472..5148839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BOP93_RS23165 (BOP93_22420) yjiA 5138781..5139743 (-) 963 WP_104504782.1 GTPase -
  BOP93_RS23170 (BOP93_22425) - 5139898..5140095 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  BOP93_RS23175 (BOP93_22430) - 5140111..5142177 (-) 2067 WP_065886913.1 carbon starvation CstA family protein -
  BOP93_RS23180 (BOP93_22435) radA 5142472..5143839 (-) 1368 WP_032884669.1 DNA repair protein RadA Machinery gene
  BOP93_RS23185 (BOP93_22440) - 5143875..5144423 (-) 549 WP_104504783.1 ankyrin repeat domain-containing protein -
  BOP93_RS23190 (BOP93_22445) katB 5144562..5146103 (-) 1542 WP_104504784.1 catalase KatB -
  BOP93_RS23195 (BOP93_22450) mscL 5146391..5146807 (+) 417 WP_065886910.1 large-conductance mechanosensitive channel protein MscL -
  BOP93_RS23200 (BOP93_22455) - 5146848..5147624 (-) 777 WP_104504785.1 ferredoxin--NADP reductase -
  BOP93_RS23205 (BOP93_22460) - 5148051..5148761 (+) 711 WP_104504786.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48759.29 Da        Isoelectric Point: 6.8987

>NTDB_id=205362 BOP93_RS23180 WP_032884669.1 5142472..5143839(-) (radA) [Pseudomonas orientalis strain F9]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=205362 BOP93_RS23180 WP_032884669.1 5142472..5143839(-) (radA) [Pseudomonas orientalis strain F9]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAATGGGCGGGCCAGTGCGGCGAGTG
CGGTGCGTGGAACACCCTGACTGAAACCATGATTGAAAGCGGTGGCGCCGCAGCGCCCACCGGCCGTGCCGGCTGGACCG
GGCAACAAGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATCCCGCGTTTCTCCACGGCCTCCGGCGAGCTG
GACCGGGTATTGGGCGGTGGCCTGGTGGACGGCTCGGTTGTGCTGATCGGCGGCGACCCCGGCATCGGTAAATCCACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGGGAAGAGTCCCAGCAACAAGTGG
CCATGCGCGCCCGTCGTCTGGGCCTGCCCCAGGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCGGCGCC
CGGCGGCGTATCCCAGGTGCGTGAAAGCGCGGCGCTGTTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACCAAGGAGGGCGCGCTGGCCGGGCCGCGAGTGCTGGAACACATGGTGGATACCGTGCTGTATTTCGAA
GGTGAATCCGATGGCCGCCTGCGGTTGCTGCGGGCGGTGAAGAACCGTTTTGGCGCGGTGAACGAGTTGGGTGTGTTTGC
CATGACTGACAGGGGGCTGAAAGAAGTCTCCAACCCCTCGGCGATCTTTCTCACCCGCGCCCAGGAAGAAGTCCCGGGCA
GCGTCGTGATGGCGACATGGGAAGGCACTCGCCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATTTGGCC
AACCCGCGCCGGGTCACCCTCGGCCTGGATCAGAACCGCCTGGCCATGCTGTTGGCGGTATTGCACCGCCATGGCGGCAT
TCCGACTCACGATCAGGACGTCTTCCTTAACGTGGTGGGCGGGGTCAAGGTGCTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAATCGGCCGTTGCCCCATGACTTGCTGGTGTTTGGCGAGGTGGGGTTGTCGGGC
GAAGTGCGCCCGGTGCCCAGTGGCCAGGAGCGCTTGAAAGAGGCGGCCAAGCATGGCTTCAAGCGGGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAAATGCCGCCAGGATTGCAGGTGATTGGGGTCACGCGCCTGGAACAGGCGCTGGATGCGCTGT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031J688

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47

Multiple sequence alignment