Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BSU_14480 Genome accession   NC_000964
Coordinates   1517865..1518143 (+) Length   92 a.a.
NCBI ID   NP_389331.1    Uniprot ID   A0A6M3ZAC5
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512865..1523143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSU_14440 (BSU14440) panE 1514052..1514963 (+) 912 NP_389327.1 2-dehydropantoate reductase -
  BSU_14450 (BSU14450) ampS 1514997..1516229 (-) 1233 NP_389328.1 aminopeptidase -
  BSU_14460 (BSU14460) ykpC 1516339..1516473 (-) 135 NP_389329.1 hypothetical protein -
  BSU_14470 (BSU14470) mreBH 1516574..1517581 (-) 1008 NP_389330.1 cell-shape determining protein -
  BSU_14480 (BSU14480) abrB 1517865..1518143 (+) 279 NP_389331.1 transcriptional regulator Regulator
  BSU_14490 (BSU14490) kinC 1518333..1519619 (+) 1287 NP_389332.1 two-component sensor potassium-responsive histidine kinase regulating cannibalism and biofilm formation -
  BSU_14500 (BSU14500) ykqA 1519635..1520468 (+) 834 NP_389333.1 putative gamma-glutamylcyclotransferase (bacillithiol degradation) -
  BSU_14510 (BSU14510) ktrC 1520531..1521196 (+) 666 NP_389334.1 potassium uptake protein -
  BSU_14520 (BSU14520) adeC 1521351..1523084 (+) 1734 NP_389335.2 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=20536 BSU_14480 NP_389331.1 1517865..1518143(+) (abrB) [Bacillus subtilis subsp. subtilis str. 168]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=20536 BSU_14480 NP_389331.1 1517865..1518143(+) (abrB) [Bacillus subtilis subsp. subtilis str. 168]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M3ZAC5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment