Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA696_RS04470 Genome accession   NZ_CP023142
Coordinates   855151..855627 (-) Length   158 a.a.
NCBI ID   WP_040089737.1    Uniprot ID   A0ABU1BYT3
Organism   Escherichia coli strain CFSAN061770     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 850151..860627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA696_RS04425 (CA696_004425) - 851013..851339 (-) 327 WP_095597202.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CA696_RS04430 (CA696_004430) - 851336..851599 (-) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  CA696_RS04435 (CA696_004435) - 851671..852537 (-) 867 WP_095597203.1 DUF4942 domain-containing protein -
  CA696_RS04440 (CA696_004440) - 852622..852819 (-) 198 WP_000839291.1 DUF957 domain-containing protein -
  CA696_RS04445 (CA696_004445) - 852831..853319 (-) 489 WP_000761677.1 DUF5983 family protein -
  CA696_RS04450 (CA696_004450) - 853316..853693 (-) 378 WP_000854721.1 TA system toxin CbtA family protein -
  CA696_RS04455 (CA696_004455) - 853783..854151 (-) 369 WP_072668294.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CA696_RS04460 (CA696_004460) - 854201..854848 (-) 648 WP_072668293.1 antitoxin of toxin-antitoxin stability system -
  CA696_RS04465 (CA696_004465) - 854867..855088 (-) 222 WP_000692318.1 DUF987 domain-containing protein -
  CA696_RS04470 (CA696_004470) radC 855151..855627 (-) 477 WP_040089737.1 RadC family protein Machinery gene
  CA696_RS04475 (CA696_004475) - 855643..856128 (-) 486 WP_095597204.1 antirestriction protein -
  CA696_RS04480 (CA696_004480) - 856219..857037 (-) 819 WP_095597205.1 DUF932 domain-containing protein -
  CA696_RS31220 - 857117..857248 (+) 132 WP_001349446.1 hypothetical protein -
  CA696_RS04485 (CA696_004485) - 857223..858107 (-) 885 WP_000010380.1 YfjP family GTPase -
  CA696_RS04490 (CA696_004490) - 858208..859430 (+) 1223 Protein_821 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17612.19 Da        Isoelectric Point: 6.9859

>NTDB_id=205350 CA696_RS04470 WP_040089737.1 855151..855627(-) (radC) [Escherichia coli strain CFSAN061770]
MQQLSFLPGEMTPGERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=205350 CA696_RS04470 WP_040089737.1 855151..855627(-) (radC) [Escherichia coli strain CFSAN061770]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACACCCGGTGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment