Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA696_RS00445 Genome accession   NZ_CP023142
Coordinates   95619..96287 (+) Length   222 a.a.
NCBI ID   WP_001297375.1    Uniprot ID   P65957
Organism   Escherichia coli strain CFSAN061770     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 90619..101287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA696_RS00410 (CA696_000410) yicC 90638..91501 (-) 864 WP_000621344.1 YicC/YloC family endoribonuclease -
  CA696_RS00420 (CA696_000420) rph 91628..92344 (+) 717 WP_001247093.1 ribonuclease PH -
  CA696_RS00425 (CA696_000425) pyrE 92410..93051 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CA696_RS00430 (CA696_000430) slmA 93088..93684 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CA696_RS00435 (CA696_000435) dut 93791..94249 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CA696_RS00440 (CA696_000440) coaBC 94227..95447 (-) 1221 WP_000050153.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CA696_RS00445 (CA696_000445) radC 95619..96287 (+) 669 WP_001297375.1 DNA repair protein RadC Machinery gene
  CA696_RS00450 (CA696_000450) rpmB 96504..96740 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CA696_RS00455 (CA696_000455) rpmG 96761..96928 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CA696_RS00460 (CA696_000460) mutM 97026..97835 (+) 810 WP_001114533.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CA696_RS00465 (CA696_000465) coaD 97874..98353 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  CA696_RS00470 (CA696_000470) waaA 98361..99638 (-) 1278 WP_000891574.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CA696_RS00475 (CA696_000475) rfaQ 100051..101109 (+) 1059 WP_000360390.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25258.35 Da        Isoelectric Point: 7.9748

>NTDB_id=205333 CA696_RS00445 WP_001297375.1 95619..96287(+) (radC) [Escherichia coli strain CFSAN061770]
MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=205333 CA696_RS00445 WP_001297375.1 95619..96287(+) (radC) [Escherichia coli strain CFSAN061770]
GTGAAAAACAATGCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GAGGGAATTTTTACAAAGCCAGCTCACGGGTGAAGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATAGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAATGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGCTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P65957

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment