Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BcFMB_RS03245 Genome accession   NZ_CP018044
Coordinates   844061..845908 (+) Length   615 a.a.
NCBI ID   WP_099721045.1    Uniprot ID   -
Organism   Bifidobacterium choerinum strain FMB-1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 839061..850908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BcFMB_RS03230 (BcFMB_03185) - 839346..840875 (+) 1530 WP_099721042.1 amino acid permease -
  BcFMB_RS03235 (BcFMB_03190) - 841361..841969 (+) 609 WP_099721043.1 MarR family winged helix-turn-helix transcriptional regulator -
  BcFMB_RS03240 (BcFMB_03195) - 842081..844000 (+) 1920 WP_099721044.1 ABC transporter ATP-binding protein -
  BcFMB_RS03245 (BcFMB_03200) rcrQ 844061..845908 (+) 1848 WP_099721045.1 ABC transporter ATP-binding protein Regulator
  BcFMB_RS03250 (BcFMB_03205) - 845985..847454 (-) 1470 WP_099721046.1 polysaccharide deacetylase family protein -
  BcFMB_RS03255 (BcFMB_03210) - 847931..848422 (-) 492 WP_157775063.1 hypothetical protein -
  BcFMB_RS03260 (BcFMB_03215) - 848422..849129 (-) 708 WP_099721048.1 phosphatase PAP2 family protein -
  BcFMB_RS03265 (BcFMB_03220) - 849242..849703 (+) 462 WP_024541445.1 hypothetical protein -
  BcFMB_RS03270 (BcFMB_03225) - 849910..850533 (-) 624 WP_024541444.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 67717.11 Da        Isoelectric Point: 5.1548

>NTDB_id=205333 BcFMB_RS03245 WP_099721045.1 844061..845908(+) (rcrQ) [Bifidobacterium choerinum strain FMB-1]
MPMGPHGPRGGAPTEKADDFGGALKELMRFSRRYIPAIIVALILGIAGTICQIIGPDYLGDMTDEITKGLPALINGKPVL
GSIDMNAVTRIAWTLVALYVAYALCSYVQSWMMATVTQRTAQRLRAAIDVKMNKLPLKYFDEHSNGDVMSRITNDVDAVG
QTLGQSLGSLITSVTLFFGALVMMFANNWLLALCAIAASIVGMALMLAVMRCSQRYFARQQAALGDVNGHVEEMYSGHVV
VKAFGGEADAIRRFERYNNDLYESGWKSQFLSGLMMPMMNLVGNLGYVVVCVVGAWLAMSGRIEFGVIVAFMMYIRFFTQ
PLSQFAQAFQNLQRCAAGAERVFTFLDEPELADESGKQPLLGMGSDGEITPVEGRVRFEHVRFGYDPDRLIIHDFSADVE
PGHKVAIVGPTGAGKTTMVNLLMRFYEISGGRITIDGIDTKDVPRWNVHDQFSMVLQDTWVFRGTVRENIVYAKEGVSDE
QVVAACKAVGLHRYIMSLPDGYDTVLDESATLSQGQKQLLTIARAMVQDSPILILDEATSSVDTRTEELIQTAMDKLTEG
RTSFVIAHRLSTIRDADMILVMKDGDIVERGTHDELLARSGFYADIYNAQFSLAQ

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=205333 BcFMB_RS03245 WP_099721045.1 844061..845908(+) (rcrQ) [Bifidobacterium choerinum strain FMB-1]
ATGCCCATGGGTCCTCACGGTCCGCGCGGTGGCGCCCCCACCGAGAAAGCGGACGACTTCGGCGGCGCGCTCAAGGAGCT
GATGCGCTTCAGTCGCCGGTACATCCCGGCGATCATCGTCGCATTGATCCTCGGCATCGCCGGCACCATCTGCCAGATCA
TCGGCCCGGATTATCTGGGTGACATGACCGACGAGATCACGAAGGGGCTGCCGGCGCTCATCAACGGCAAGCCGGTGCTC
GGATCGATCGACATGAACGCCGTCACGCGCATCGCATGGACGCTCGTCGCGCTGTATGTCGCATACGCGCTGTGCTCGTA
CGTGCAGAGCTGGATGATGGCGACGGTCACGCAGCGCACGGCGCAGCGTCTGCGTGCGGCGATCGACGTCAAGATGAACA
AGCTGCCGCTCAAGTATTTCGACGAGCACAGCAACGGCGACGTGATGAGCCGCATCACGAACGACGTCGACGCCGTCGGG
CAGACGCTCGGACAGTCGCTCGGCTCGCTGATCACGTCGGTCACGTTGTTCTTCGGCGCGCTCGTCATGATGTTCGCGAA
CAACTGGCTGCTCGCGCTGTGCGCGATCGCGGCGAGCATCGTCGGCATGGCGCTCATGCTTGCCGTCATGCGGTGTTCCC
AGCGGTACTTCGCCCGGCAGCAGGCTGCGCTCGGCGACGTCAACGGCCACGTCGAGGAGATGTACAGCGGCCACGTCGTC
GTCAAGGCGTTCGGCGGCGAGGCCGACGCGATCCGCCGCTTCGAACGCTACAACAACGACCTCTACGAGTCGGGATGGAA
GAGCCAGTTCCTGTCCGGCCTGATGATGCCGATGATGAACCTCGTCGGCAACCTCGGCTACGTCGTCGTCTGCGTCGTCG
GCGCATGGCTCGCGATGAGCGGACGCATTGAATTCGGCGTCATCGTCGCGTTCATGATGTACATCCGATTCTTCACGCAG
CCGCTGTCGCAGTTCGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCCGCCGGCGCCGAACGGGTGTTCACGTTCCTCGA
CGAGCCCGAACTCGCCGACGAAAGCGGCAAGCAGCCGCTGCTCGGCATGGGCTCCGACGGCGAGATCACGCCGGTCGAGG
GCCGTGTGCGCTTCGAGCACGTCAGGTTCGGCTATGACCCCGACCGACTGATCATCCACGACTTCTCCGCCGACGTCGAA
CCGGGGCACAAGGTGGCGATCGTCGGGCCGACCGGCGCCGGCAAGACGACGATGGTCAACCTGCTGATGCGTTTCTACGA
GATCAGCGGCGGCAGGATCACGATCGACGGCATCGACACGAAGGACGTGCCGCGCTGGAACGTGCACGACCAGTTCTCGA
TGGTGCTGCAGGACACGTGGGTGTTCCGCGGCACCGTGCGCGAGAACATCGTGTACGCGAAGGAGGGCGTCAGCGACGAG
CAGGTCGTCGCCGCCTGCAAGGCCGTCGGTCTGCATCGGTACATCATGTCGCTGCCGGACGGCTACGACACCGTGCTCGA
CGAGTCGGCGACGTTGTCGCAGGGGCAGAAGCAGCTGCTGACGATCGCGCGCGCGATGGTGCAGGATTCGCCGATCCTGA
TCCTCGACGAGGCGACGAGCTCGGTCGACACGCGCACCGAGGAGCTCATTCAGACGGCGATGGACAAGCTCACCGAAGGG
CGCACGAGCTTCGTCATCGCGCACCGCCTGTCCACGATCCGCGACGCCGACATGATCCTCGTCATGAAGGACGGCGACAT
CGTCGAACGCGGCACGCACGACGAGCTGCTCGCGCGCAGCGGCTTCTACGCCGACATCTACAACGCGCAGTTCTCGCTCG
CGCAGTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-540)

ABC transporter transmembrane region (ABC_membrane)

(38-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.499

95.772

0.522

Multiple sequence alignment