Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC69_RS09675 Genome accession   NZ_CP023061
Coordinates   1901285..1902712 (-) Length   475 a.a.
NCBI ID   WP_000980568.1    Uniprot ID   B7L9N7
Organism   Escherichia coli strain FORC_069     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1896285..1907712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC69_RS09645 (FORC69_1869) yeeZ 1896340..1897164 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  FORC69_RS09650 (FORC69_1870) yeeY 1897210..1898139 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  FORC69_RS09655 yoeI 1898354..1898416 (+) 63 WP_010723108.1 membrane protein YoeI -
  FORC69_RS09660 (FORC69_1871) plaP 1898406..1899764 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FORC69_RS09665 (FORC69_1873) tsuA 1899943..1901001 (+) 1059 WP_000492324.1 thiosulfate utilization transporter TsuA/YeeE -
  FORC69_RS09670 (FORC69_1874) tsuB 1901015..1901242 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FORC69_RS09675 (FORC69_1875) sbcB 1901285..1902712 (-) 1428 WP_000980568.1 exodeoxyribonuclease I Machinery gene
  FORC69_RS09680 (FORC69_1876) dacD 1902921..1904087 (+) 1167 WP_000830163.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FORC69_RS09685 (FORC69_1877) sbmC 1904206..1904679 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  FORC69_RS09690 (FORC69_1878) yeeA 1904877..1905935 (+) 1059 WP_001200905.1 FUSC family protein -
  FORC69_RS09695 (FORC69_1880) tmaR 1906107..1906436 (+) 330 WP_000450409.1 DUF496 family protein -
  FORC69_RS09700 (FORC69_1881) - 1906537..1906719 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  FORC69_RS28500 - 1906839..1906919 (+) 81 WP_023441679.1 hypothetical protein -
  FORC69_RS09710 (FORC69_1882) - 1907208..1907288 (-) 81 Protein_1782 hypothetical protein -
  FORC69_RS09715 (FORC69_1883) yeeW 1907334..1907528 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54485.76 Da        Isoelectric Point: 5.4700

>NTDB_id=205209 FORC69_RS09675 WP_000980568.1 1901285..1902712(-) (sbcB) [Escherichia coli strain FORC_069]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=205209 FORC69_RS09675 WP_000980568.1 1901285..1902712(-) (sbcB) [Escherichia coli strain FORC_069]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L9N7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment