Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   DN94_01080 Genome accession   CP007565
Coordinates   181808..182569 (+) Length   253 a.a.
NCBI ID   AHX74382.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 176808..187569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_01065 - 178133..179452 (+) 1320 AHX74379.1 peptidoglycan hydrolase -
  DN94_01070 - 179576..180544 (+) 969 AHX74380.1 ribose-phosphate pyrophosphokinase -
  DN94_01075 - 180652..181818 (+) 1167 AHX74381.1 aromatic amino acid aminotransferase -
  DN94_01080 recO 181808..182569 (+) 762 AHX74382.1 DNA recombination protein RecO Machinery gene
  DN94_01085 - 182634..183221 (-) 588 AHX74383.1 integrase -
  DN94_01090 - 183476..183766 (-) 291 AHX74384.1 transposase -
  DN94_01095 - 183887..184765 (+) 879 AHX74385.1 CAAX protease -
  DN94_01100 - 184843..185835 (+) 993 AHX74386.1 phosphate acyltransferase -
  DN94_01105 - 185846..186085 (+) 240 AHX74387.1 acyl carrier protein -
  DN94_01110 - 186209..186913 (+) 705 AHX74388.1 phosphoribosylaminoimidazole-succinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29656.05 Da        Isoelectric Point: 6.2989

>NTDB_id=20519 DN94_01080 AHX74382.1 181808..182569(+) (recO) [Streptococcus agalactiae strain 138spar]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
TNSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=20519 DN94_01080 AHX74382.1 181808..182569(+) (recO) [Streptococcus agalactiae strain 138spar]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGGAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ACTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGATGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTACTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTGTACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.228

97.233

0.625

Multiple sequence alignment