Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   Y71_RS17730 Genome accession   NZ_CP018016
Coordinates   3656006..3656626 (-) Length   206 a.a.
NCBI ID   WP_007374186.1    Uniprot ID   A0AAX2EN59
Organism   Kosakonia radicincitans DSM 16656     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3651006..3661626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y71_RS17715 (Y71_17360) helD 3651242..3653296 (-) 2055 WP_007374189.1 DNA helicase IV -
  Y71_RS17720 (Y71_17365) - 3653419..3653865 (+) 447 WP_007374188.1 YccF domain-containing protein -
  Y71_RS17725 (Y71_17370) yccS 3653883..3656012 (+) 2130 WP_007374187.1 YccS family putative transporter -
  Y71_RS17730 (Y71_17375) sxy/tfoX 3656006..3656626 (-) 621 WP_007374186.1 TfoX/Sxy family DNA transformation protein Regulator
  Y71_RS17735 (Y71_17380) sulA 3656844..3657353 (+) 510 WP_007374185.1 SOS-induced cell division inhibitor SulA -
  Y71_RS17740 (Y71_17385) ompA 3657720..3658769 (+) 1050 WP_007374183.1 porin OmpA -
  Y71_RS17745 (Y71_17390) matP 3658847..3659299 (-) 453 WP_007374182.1 macrodomain Ter protein MatP -
  Y71_RS17750 (Y71_17395) - 3659482..3661242 (+) 1761 WP_007374181.1 Lon protease family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23637.34 Da        Isoelectric Point: 8.4759

>NTDB_id=205058 Y71_RS17730 WP_007374186.1 3656006..3656626(-) (sxy/tfoX) [Kosakonia radicincitans DSM 16656]
MEDLSYQRIYQSCECLTSLGEIRHRAHFGGYSLSVDDTVFAMVAEGELYLRACEQSAQYAITHHAPLLVFNKRGREVSLN
YYFVDQALWNDRPMLLELSAYSLDAARREKVQRSARKRLRDLPNLTFQLEMQLRDVGIMDVQTLRLLGAKASWLRLRKAN
CHLGVKILLALEGAITGLHEAALPAQTRQELMEWFTIVMKKTANPH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=205058 Y71_RS17730 WP_007374186.1 3656006..3656626(-) (sxy/tfoX) [Kosakonia radicincitans DSM 16656]
ATGGAAGACCTTTCTTATCAGCGTATATATCAATCATGTGAATGTCTCACATCGCTTGGCGAAATTCGTCACCGTGCGCA
TTTTGGCGGTTATAGCTTGTCGGTGGATGACACGGTTTTTGCAATGGTGGCCGAAGGAGAGCTTTATCTGCGGGCCTGTG
AACAAAGCGCTCAATATGCAATAACGCACCATGCGCCACTTTTAGTATTCAACAAACGTGGACGGGAGGTTTCGTTAAAT
TACTACTTTGTGGATCAGGCATTATGGAACGATCGCCCTATGCTGCTGGAACTTTCGGCATATTCTCTCGATGCTGCACG
GCGTGAAAAAGTGCAGCGCAGCGCCCGGAAACGTCTTCGCGATCTCCCTAATCTGACGTTTCAGCTCGAAATGCAGCTTC
GTGATGTCGGAATTATGGATGTACAGACGTTGCGTCTTCTTGGCGCAAAGGCCAGTTGGCTCAGGTTGCGGAAAGCGAAT
TGCCATCTGGGGGTGAAAATTCTTCTGGCGCTGGAAGGCGCTATTACTGGATTGCACGAAGCGGCGCTCCCGGCGCAGAC
GCGCCAGGAACTGATGGAGTGGTTCACTATTGTGATGAAGAAAACGGCCAATCCTCACTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.049

99.515

0.578

Multiple sequence alignment