Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | PSJM300_17120 | Genome accession | CP003725 |
| Coordinates | 3718950..3719657 (+) | Length | 235 a.a. |
| NCBI ID | AFN79479.1 | Uniprot ID | - |
| Organism | Pseudomonas stutzeri DSM 10701 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3713950..3724657
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSJM300_17095 | bioD | 3714298..3714978 (-) | 681 | AFN79474.1 | dithiobiotin synthetase | - |
| PSJM300_17100 | - | 3714980..3715795 (-) | 816 | AFN79475.1 | biotin biosynthesis protein BioC | - |
| PSJM300_17105 | - | 3715792..3716514 (-) | 723 | AFN79476.1 | bioH protein | - |
| PSJM300_17110 | - | 3716507..3717688 (-) | 1182 | AFN79477.1 | 8-amino-7-oxononanoate synthase | - |
| PSJM300_17115 | - | 3717808..3718863 (-) | 1056 | AFN79478.1 | biotin synthase | - |
| PSJM300_17120 | comFC | 3718950..3719657 (+) | 708 | AFN79479.1 | phosphoribosyl transferase | Machinery gene |
| PSJM300_17125 | - | 3719727..3720701 (+) | 975 | AFN79480.1 | serine/threonine protein kinase | - |
| PSJM300_17130 | - | 3720749..3721522 (-) | 774 | AFN79481.1 | transmembrane protein | - |
| PSJM300_17135 | - | 3721631..3722071 (-) | 441 | AFN79482.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 235 a.a. Molecular weight: 26358.50 Da Isoelectric Point: 8.5156
>NTDB_id=20500 PSJM300_17120 AFN79479.1 3718950..3719657(+) (comFC) [Pseudomonas stutzeri DSM 10701]
MVYNWLKFEHSCQLCDERCEPGQSLCPGCETELPWLGSQCSICALPLPVAGAVCGECLKHPPAFDHVAVPWRFAFPVDSL
ITRFKHQSRWPFGRLLAEHLARHLQHAFDEGLPRPEALLPVPLARRRLRQRGFNQARMLADWLSPVLKIPVRNDLAQRIQ
DTPSQQQLDAAARRRNLRQAFALAEGQVLHGQHLAVIDDVFTTGATAEALARLLKRAGAARVDIYCLARTPKPGE
MVYNWLKFEHSCQLCDERCEPGQSLCPGCETELPWLGSQCSICALPLPVAGAVCGECLKHPPAFDHVAVPWRFAFPVDSL
ITRFKHQSRWPFGRLLAEHLARHLQHAFDEGLPRPEALLPVPLARRRLRQRGFNQARMLADWLSPVLKIPVRNDLAQRIQ
DTPSQQQLDAAARRRNLRQAFALAEGQVLHGQHLAVIDDVFTTGATAEALARLLKRAGAARVDIYCLARTPKPGE
Nucleotide
Download Length: 708 bp
>NTDB_id=20500 PSJM300_17120 AFN79479.1 3718950..3719657(+) (comFC) [Pseudomonas stutzeri DSM 10701]
ATGGTTTACAACTGGTTAAAATTCGAACACAGCTGTCAACTTTGCGACGAACGCTGCGAACCCGGTCAGTCGCTATGTCC
GGGCTGCGAAACGGAGCTGCCCTGGCTCGGCAGTCAATGCAGCATCTGCGCTTTGCCATTGCCGGTGGCCGGCGCGGTCT
GCGGCGAGTGCCTCAAGCATCCGCCGGCTTTCGATCACGTCGCCGTCCCGTGGCGCTTCGCCTTTCCGGTGGACAGTCTG
ATCACCCGTTTCAAGCATCAGTCGCGCTGGCCATTCGGGCGACTGCTCGCCGAGCACCTGGCGCGCCATCTGCAGCACGC
TTTCGATGAAGGCCTGCCACGCCCCGAAGCTCTGTTGCCGGTGCCCCTGGCGCGCAGGCGGCTGCGTCAGCGTGGCTTCA
ACCAGGCGCGGATGCTGGCGGACTGGCTGAGCCCGGTCTTGAAGATTCCGGTTCGCAACGACCTGGCGCAGCGCATCCAG
GACACACCCTCCCAGCAGCAGCTGGACGCCGCGGCCCGCCGCCGCAACCTGCGCCAGGCCTTCGCGCTGGCCGAGGGACA
GGTCCTGCACGGACAACATCTGGCGGTCATCGATGATGTATTCACCACCGGCGCCACCGCCGAGGCTCTGGCGCGCCTGT
TGAAACGGGCCGGTGCCGCGCGGGTCGATATCTACTGCCTGGCGCGTACGCCCAAGCCGGGGGAGTGA
ATGGTTTACAACTGGTTAAAATTCGAACACAGCTGTCAACTTTGCGACGAACGCTGCGAACCCGGTCAGTCGCTATGTCC
GGGCTGCGAAACGGAGCTGCCCTGGCTCGGCAGTCAATGCAGCATCTGCGCTTTGCCATTGCCGGTGGCCGGCGCGGTCT
GCGGCGAGTGCCTCAAGCATCCGCCGGCTTTCGATCACGTCGCCGTCCCGTGGCGCTTCGCCTTTCCGGTGGACAGTCTG
ATCACCCGTTTCAAGCATCAGTCGCGCTGGCCATTCGGGCGACTGCTCGCCGAGCACCTGGCGCGCCATCTGCAGCACGC
TTTCGATGAAGGCCTGCCACGCCCCGAAGCTCTGTTGCCGGTGCCCCTGGCGCGCAGGCGGCTGCGTCAGCGTGGCTTCA
ACCAGGCGCGGATGCTGGCGGACTGGCTGAGCCCGGTCTTGAAGATTCCGGTTCGCAACGACCTGGCGCAGCGCATCCAG
GACACACCCTCCCAGCAGCAGCTGGACGCCGCGGCCCGCCGCCGCAACCTGCGCCAGGCCTTCGCGCTGGCCGAGGGACA
GGTCCTGCACGGACAACATCTGGCGGTCATCGATGATGTATTCACCACCGGCGCCACCGCCGAGGCTCTGGCGCGCCTGT
TGAAACGGGCCGGTGCCGCGCGGGTCGATATCTACTGCCTGGCGCGTACGCCCAAGCCGGGGGAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Legionella pneumophila str. Paris |
38.667 |
95.745 |
0.37 |