Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   PSJM300_16785 Genome accession   CP003725
Coordinates   3654184..3657033 (+) Length   949 a.a.
NCBI ID   AFN79414.1    Uniprot ID   -
Organism   Pseudomonas stutzeri DSM 10701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3649184..3662033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSJM300_16760 - 3649278..3649970 (+) 693 AFN79409.1 OmpW family protein -
  PSJM300_16765 - 3650133..3651062 (-) 930 AFN79410.1 epimerase -
  PSJM300_16770 - 3651055..3651939 (-) 885 AFN79411.1 dTDP-4-dehydrorhamnose reductase -
  PSJM300_16775 ssb 3651950..3652432 (-) 483 AFN79412.1 single-stranded DNA-binding protein Machinery gene
  PSJM300_16780 - 3652606..3653973 (-) 1368 AFN79413.1 major facilitator family transporter -
  PSJM300_16785 uvrA 3654184..3657033 (+) 2850 AFN79414.1 excinuclease ABC subunit A Machinery gene
  PSJM300_16790 - 3657102..3658562 (-) 1461 AFN79415.1 catalase -
  PSJM300_16795 rplQ 3658743..3659129 (-) 387 AFN79416.1 50S ribosomal protein L17 -
  PSJM300_16800 - 3659175..3660176 (-) 1002 AFN79417.1 DNA-directed RNA polymerase subunit alpha -
  PSJM300_16805 rpsD 3660199..3660819 (-) 621 AFN79418.1 30S ribosomal protein S4 -
  PSJM300_16810 - 3660837..3661226 (-) 390 AFN79419.1 30S ribosomal protein S11 -
  PSJM300_16815 rpsM 3661246..3661602 (-) 357 AFN79420.1 30S ribosomal protein S13 -
  PSJM300_16820 - 3661734..3661850 (-) 117 AFN79421.1 50S ribosomal protein L36 -

Sequence

Protein


Download         Length: 949 a.a.        Molecular weight: 104581.06 Da        Isoelectric Point: 6.3821

>NTDB_id=20499 PSJM300_16785 AFN79414.1 3654184..3657033(+) (uvrA) [Pseudomonas stutzeri DSM 10701]
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDTIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPDHDAPLEAQTVSQMVDQVLALPEGSKLMLLAPVIRERKG
EHLAVFDELRAQGFVRARVNGKLYELDELPKLDKQKKHSIDVVVDRFKVRSDLQQRLAESFETALKLADGIALVAPMEDD
DDAEEMIFSARFACPICGHSISELEPKLFSFNNPAGACPTCDGLGAKQFFDAKRLVNGELTLAEGAIRGWDRRNVYYFQM
LGSLASHYGFSLDEPFDSLPEKHQQCILRGSGKESVDFRYLNDRGDIVKRSHPFEGIIPNLERRYRETESNSVREELAKY
LSTQPCPECRGTRLRREARHVWVGDKTLPAVTTLPIGDAAEYFGGLTLSGRRGEIADKILKEIGERLQFLVNVGLDYLTL
DRSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLGTLRHLRDIGNTVIVVEHDEDAIRLADYVLDI
GPGAGVHGGQIVAEGTPDEVMANPASLTGGYLSGRVKIHYPAKRTPRDAGKLLKLKGARGNNLRNVDLEIPVGLLTCITG
VSGSGKSTLINNTLFPITATALNGATTLEVAAHDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPE
ARSRGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCKGKRYNRETLEVKYKGKSITEVLDMTIEEAREFF
DPVPAVARKLQTLMDVGLSYIKLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRD
HGNTVVVIEHNLDVIKTADWLVDLGPEGGSKGGQIIATGTPEEVAEMPQSHTGHFLKPLLERDRGQATE

Nucleotide


Download         Length: 2850 bp        

>NTDB_id=20499 PSJM300_16785 AFN79414.1 3654184..3657033(+) (uvrA) [Pseudomonas stutzeri DSM 10701]
TTGGACAAGATTCTGATTCGTGGAGCTCGTACCCACAACCTGAAGAACATCGACCTGACCCTGCCACGCGACAAGCTGAT
CGTGATCACCGGCCTGTCCGGCTCAGGCAAGTCCTCGCTGGCCTTCGACACCCTCTATGCCGAAGGCCAGCGCCGCTACG
TGGAATCGCTGTCGGCCTATGCCCGGCAGTTCCTGTCGATGATGGAAAAACCCGACGTCGACACCATCGAGGGTCTGTCA
CCGGCGATCTCCATCGAACAGAAGTCCACCTCGCACAACCCGCGCTCCACCGTGGGCACCATCACCGAGATCTACGACTA
CCTGCGCCTGCTCTACGCGCGGGTCGGCACGCCGCGCTGCCCCGATCACGACGCGCCGCTGGAGGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTACTGGCCCTGCCTGAAGGCAGCAAGCTGATGCTACTGGCCCCGGTGATCCGCGAGCGCAAGGGC
GAGCACCTGGCGGTGTTCGATGAACTGCGCGCCCAGGGCTTCGTCCGCGCGCGGGTCAACGGCAAGCTGTACGAGCTCGA
CGAGTTGCCGAAACTGGACAAGCAGAAGAAGCACTCCATCGATGTCGTGGTGGACCGTTTCAAGGTCCGCAGCGACCTGC
AGCAGCGCCTGGCCGAATCCTTCGAGACCGCCCTCAAGCTGGCCGATGGCATCGCCCTGGTCGCGCCCATGGAAGATGAC
GACGACGCCGAGGAGATGATCTTTTCGGCGCGCTTCGCCTGCCCGATCTGCGGCCACTCGATCAGCGAGCTGGAACCCAA
GCTGTTCTCGTTCAACAACCCGGCCGGCGCCTGCCCGACCTGCGACGGCCTGGGCGCCAAGCAGTTCTTCGACGCCAAAC
GCCTGGTCAACGGCGAACTGACCCTGGCCGAGGGCGCGATCCGCGGCTGGGACAGGCGCAATGTCTACTACTTCCAGATG
CTCGGCTCGCTGGCCTCGCATTACGGCTTCAGCCTCGACGAGCCTTTCGACTCACTGCCCGAGAAGCATCAGCAATGCAT
CCTGCGCGGCAGTGGCAAGGAAAGCGTCGACTTCCGCTATCTCAACGACCGTGGCGACATCGTCAAGCGCTCGCATCCGT
TCGAAGGGATCATCCCCAATCTCGAACGCCGCTATCGCGAAACGGAATCCAACAGCGTCCGCGAAGAACTGGCCAAGTAC
CTCAGCACCCAGCCCTGCCCAGAATGTCGCGGCACGCGCTTGCGCCGCGAGGCACGCCACGTGTGGGTCGGCGACAAGAC
GCTGCCGGCCGTCACCACACTGCCGATCGGGGATGCGGCCGAATATTTCGGCGGCCTGACACTGAGCGGCCGACGCGGCG
AGATCGCCGACAAGATTCTCAAGGAAATCGGCGAGCGCCTGCAGTTCCTGGTCAACGTCGGCCTCGACTACCTGACCCTG
GACCGTAGCGCCGATACCCTTTCCGGCGGCGAAGCGCAGCGTATCCGCCTGGCCAGCCAGATCGGCGCCGGGCTGGTGGG
CGTCATGTACATCCTCGACGAACCTTCGATCGGTCTGCACCAGCGCGACAACGAGCGCCTGCTCGGCACCCTGCGCCACC
TGCGCGACATCGGCAACACGGTGATCGTCGTCGAGCACGATGAAGACGCCATCCGCCTGGCCGACTACGTGCTCGATATC
GGCCCCGGCGCCGGCGTGCATGGCGGCCAGATCGTCGCCGAGGGCACGCCGGACGAAGTCATGGCCAACCCCGCCTCCCT
CACCGGCGGCTATCTGTCCGGACGGGTGAAGATCCACTATCCGGCCAAGCGCACCCCGCGCGATGCCGGCAAACTGCTGA
AGCTCAAGGGCGCGCGCGGCAACAACCTGCGCAACGTCGACCTGGAAATCCCCGTGGGCCTGCTGACCTGCATCACCGGG
GTGTCGGGCTCGGGCAAGTCGACGCTGATCAACAACACCCTATTCCCGATCACGGCGACCGCGCTCAATGGCGCCACGAC
GCTCGAGGTGGCCGCGCACGATTCCTTCGACGGGCTGCAGCACCTCGACAAGGTGGTGGACATCGACCAGAGCCCGATCG
GCCGCACGCCGCGCTCGAACCCGGCGACCTACACCGGCCTGTTCACGCCGATTCGCGAGCTCTTCGCCGGCGTCCCGGAA
GCCCGCTCACGCGGCTACGGTCCGGGACGCTTCTCCTTCAACGTCAAGGGCGGGCGCTGCGAAGCCTGCCAGGGCGATGG
TGTGATCAAGGTGGAGATGCACTTCCTGCCGGACATCTACGTGCCCTGCGACGTGTGCAAGGGCAAGCGCTACAACCGCG
AAACCCTGGAAGTGAAGTACAAGGGCAAGAGCATCACCGAGGTGCTCGACATGACCATCGAGGAAGCCCGTGAGTTCTTC
GATCCGGTACCGGCGGTGGCGCGCAAGCTGCAGACGCTGATGGATGTAGGCCTGTCCTATATCAAGCTCGGGCAGAGTGC
GACCACGCTGTCGGGCGGCGAGGCGCAAAGGGTCAAGCTGTCCCGCGAGCTGTCCAAGCGGGATACCGGCAAGACGCTGT
ACATCCTCGACGAACCCACCACCGGCCTGCACTTCGCCGATATCCAGCAGCTGCTGGACGTGCTGCACCGGCTACGCGAC
CACGGCAACACGGTGGTGGTCATCGAGCACAATCTGGATGTGATCAAGACCGCCGACTGGCTGGTCGACCTGGGGCCGGA
AGGCGGCTCCAAGGGTGGGCAGATCATCGCCACGGGCACGCCTGAAGAGGTGGCCGAGATGCCGCAGTCGCATACGGGTC
ACTTCCTCAAGCCGCTGCTGGAGCGCGACCGGGGGCAAGCGACGGAGTAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(291-399)

UvrA interaction domain (UvrA_inter)

(130-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.973

99.789

0.579
  uvrA Streptococcus pneumoniae TIGR4

57.973

99.789

0.579
  uvrA Streptococcus pneumoniae D39

57.973

99.789

0.579

Multiple sequence alignment