Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   BI355_RS02550 Genome accession   NZ_CP017996
Coordinates   532546..533919 (+) Length   457 a.a.
NCBI ID   WP_057867346.1    Uniprot ID   -
Organism   Companilactobacillus crustorum strain MN047     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 527546..538919
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI355_RS02530 (BI355_0497) - 529503..530846 (-) 1344 WP_075887429.1 aminopeptidase C -
  BI355_RS02535 (BI355_0498) rpiA 530860..531549 (-) 690 WP_075887430.1 ribose-5-phosphate isomerase RpiA -
  BI355_RS02540 (BI355_0499) - 531550..531852 (-) 303 WP_075887431.1 GNAT family N-acetyltransferase -
  BI355_RS02545 (BI355_0500) - 531984..532526 (+) 543 WP_057867307.1 dUTP diphosphatase -
  BI355_RS02550 (BI355_0501) radA 532546..533919 (+) 1374 WP_057867346.1 DNA repair protein RadA Machinery gene
  BI355_RS02555 (BI355_0502) - 533933..535204 (+) 1272 WP_075887432.1 PIN/TRAM domain-containing protein -
  BI355_RS02560 (BI355_0503) gltX 535185..536681 (+) 1497 WP_057867309.1 glutamate--tRNA ligase -
  BI355_RS02565 (BI355_0504) cysS 536896..538305 (+) 1410 WP_057867310.1 cysteine--tRNA ligase -
  BI355_RS02570 (BI355_0505) - 538298..538711 (+) 414 WP_057867311.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49895.29 Da        Isoelectric Point: 7.1402

>NTDB_id=204918 BI355_RS02550 WP_057867346.1 532546..533919(+) (radA) [Companilactobacillus crustorum strain MN047]
MAKAKTKFVCQNCGYVSPKYLGRCPNCGVWNQMVEEVDHPEAAKASATPSRRVSDVESKPVKISEVSFEKEPRVKTDLGE
LNRVLGGGIVPGSLILIGGDPGIGKSTLLTQVSGQLAKDGGKVLYVSGEESASQIKMRADRLGITGDNLYLYPQTDMSYI
RQTIDEMHPDYLIIDSVQTMDEPEITSAVGSISQIREVTAELMNIAKQQNVTVFVVGHVTKGGAIAGPKILEHMVDTVLY
FEGDTHHSYRILRSVKNRFGSTNEIGIFEMRTKGLVEVANPSEIFLEERLVNANGSAVVVSMEGTRPILVEIQSLITPTI
FGNAKRTATGLDHNRVSVIMAVLEKRGNLMLQNQDAYLKSTGGVKLDEPAIDLALAMSIASSYKNTGIPGTDCFVGEVGL
TGEVRRVNRIDQRVNEAEKLGFKRIFIPKNNLGDWSKHNKIQIIGVSTVLDAMNKIF

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=204918 BI355_RS02550 WP_057867346.1 532546..533919(+) (radA) [Companilactobacillus crustorum strain MN047]
TTGGCTAAAGCTAAAACAAAATTTGTTTGTCAAAACTGTGGGTATGTTTCTCCCAAATATTTAGGACGTTGTCCTAATTG
TGGTGTCTGGAATCAAATGGTAGAAGAAGTTGATCATCCAGAGGCTGCCAAAGCAAGCGCTACACCAAGTCGCCGTGTCA
GTGATGTAGAATCTAAACCAGTTAAGATTTCGGAGGTCTCTTTTGAAAAAGAACCTCGGGTTAAAACTGATTTAGGTGAG
TTGAATCGAGTTTTAGGTGGAGGCATTGTTCCAGGATCATTAATTTTAATCGGTGGTGATCCTGGTATTGGTAAATCGAC
CTTATTAACGCAGGTTTCAGGACAATTAGCTAAAGACGGTGGCAAAGTACTTTATGTTTCAGGTGAAGAGAGTGCTTCAC
AGATTAAGATGCGGGCAGACCGATTGGGAATTACTGGCGATAATTTATATCTATATCCTCAGACTGATATGAGTTATATT
CGTCAAACAATTGATGAAATGCATCCTGATTATTTGATTATTGATTCAGTTCAAACTATGGACGAACCAGAAATTACTTC
AGCAGTTGGAAGTATTTCACAAATTCGTGAGGTTACAGCTGAATTAATGAATATTGCTAAGCAACAAAACGTTACAGTTT
TTGTTGTTGGACATGTTACAAAAGGTGGGGCTATTGCTGGTCCTAAGATTTTGGAGCATATGGTAGATACAGTGCTGTAT
TTTGAGGGCGATACGCACCACAGTTATCGAATTTTACGGTCGGTTAAAAATCGTTTTGGCTCAACCAATGAAATCGGTAT
TTTTGAAATGCGAACTAAGGGATTGGTTGAAGTTGCTAATCCTTCAGAGATATTTTTAGAAGAACGTTTGGTAAATGCCA
ATGGTTCTGCAGTAGTTGTATCTATGGAAGGTACAAGACCTATTTTGGTCGAGATTCAATCACTAATTACCCCAACTATT
TTTGGAAATGCCAAACGGACGGCAACTGGATTAGATCATAATCGGGTGTCTGTAATCATGGCAGTTCTTGAAAAGCGGGG
TAATTTAATGCTTCAGAATCAAGATGCCTATCTAAAATCAACTGGTGGCGTTAAGTTGGATGAACCTGCAATTGATTTGG
CTTTGGCAATGTCAATTGCTTCTAGCTATAAAAATACAGGTATTCCGGGAACTGATTGTTTTGTCGGTGAAGTTGGCTTG
ACTGGTGAAGTAAGACGGGTCAATCGAATTGATCAACGGGTTAATGAGGCTGAAAAATTAGGCTTCAAACGTATTTTTAT
ACCTAAAAATAACTTGGGCGATTGGTCTAAGCATAATAAGATTCAGATAATCGGCGTCAGTACAGTTTTAGATGCAATGA
ATAAAATTTTTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(62-223)

Subunit ChlI of Mg-chelatase (ChlI)

(367-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae D39

64.114

100

0.641
  radA Streptococcus mitis NCTC 12261

64.114

100

0.641
  radA Streptococcus pneumoniae Rx1

64.114

100

0.641
  radA Streptococcus mitis SK321

64.114

100

0.641
  radA Streptococcus pneumoniae R6

64.114

100

0.641
  radA Streptococcus pneumoniae TIGR4

64.114

100

0.641
  radA Bacillus subtilis subsp. subtilis str. 168

64.018

99.125

0.635

Multiple sequence alignment