Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PSJM300_12775 Genome accession   CP003725
Coordinates   2811736..2812092 (+) Length   118 a.a.
NCBI ID   AFN78617.1    Uniprot ID   -
Organism   Pseudomonas stutzeri DSM 10701     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2806736..2817092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSJM300_12750 - 2806967..2808211 (+) 1245 AFN78612.1 3-oxoacyl-(acyl carrier protein) synthase II -
  PSJM300_12755 - 2808223..2809029 (+) 807 AFN78613.1 4-amino-4-deoxychorismate lyase -
  PSJM300_12760 - 2809026..2810093 (+) 1068 AFN78614.1 hypothetical protein -
  PSJM300_12765 tmk 2810090..2810722 (+) 633 AFN78615.1 thymidylate kinase -
  PSJM300_12770 - 2810709..2811704 (+) 996 AFN78616.1 DNA polymerase III subunit delta' -
  PSJM300_12775 pilZ 2811736..2812092 (+) 357 AFN78617.1 type 4 fimbrial biogenesis protein PilZ Machinery gene
  PSJM300_12780 - 2812145..2812642 (-) 498 AFN78618.1 hypothetical protein -
  PSJM300_12785 - 2812792..2813004 (-) 213 AFN78619.1 cold-shock DNA-binding domain-containing protein -
  PSJM300_12790 - 2813216..2813398 (-) 183 AFN78620.1 hypothetical protein -
  PSJM300_12795 queA 2813640..2814689 (+) 1050 AFN78621.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  PSJM300_12800 tgt 2814704..2815819 (+) 1116 AFN78622.1 queuine tRNA-ribosyltransferase -
  PSJM300_12805 yajC 2815862..2816191 (+) 330 AFN78623.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12788.89 Da        Isoelectric Point: 10.0638

>NTDB_id=20487 PSJM300_12775 AFN78617.1 2811736..2812092(+) (pilZ) [Pseudomonas stutzeri DSM 10701]
MSLPANLGPRNGILSLTIKDKSVLYAAFMPFIKHGGLFIPTNKSYKLGDEVFMLLNLMDEPEKIPVAGKVVWITPKGAQG
NRAAGVGVQFNEGDSTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=20487 PSJM300_12775 AFN78617.1 2811736..2812092(+) (pilZ) [Pseudomonas stutzeri DSM 10701]
ATGAGCCTGCCTGCAAATCTCGGTCCGCGTAATGGCATCCTGTCCTTGACGATCAAGGACAAGTCCGTGCTGTACGCTGC
GTTCATGCCCTTCATCAAGCATGGCGGGTTGTTCATTCCCACCAACAAGAGCTACAAGCTTGGTGATGAAGTGTTCATGC
TGCTGAACCTGATGGATGAGCCGGAGAAGATTCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCCAAGGGTGCCCAGGGC
AACCGCGCTGCAGGTGTGGGCGTGCAGTTCAATGAAGGGGATTCGACGGCGCGCAACAAGATCGAAACCTACTTGGCCGG
CGCACTGAAGTCTGATCGCCCGACGCACACCATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.533

90.678

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.533

90.678

0.449

Multiple sequence alignment