Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | Aba10324_RS08010 | Genome accession | NZ_CP023022 |
| Coordinates | 1664531..1665046 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477149.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain 10324 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1659531..1670046
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Aba10324_RS07995 (Aba10324_08000) | - | 1659851..1661311 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| Aba10324_RS08000 (Aba10324_08005) | - | 1661588..1662793 (+) | 1206 | WP_000512701.1 | RtcB family protein | - |
| Aba10324_RS19050 | - | 1662797..1662955 (+) | 159 | WP_000692859.1 | hypothetical protein | - |
| Aba10324_RS08005 (Aba10324_08010) | omp38 | 1663079..1664149 (-) | 1071 | WP_000777877.1 | outer membrane protein Omp38 | - |
| Aba10324_RS08010 (Aba10324_08015) | fimT | 1664531..1665046 (+) | 516 | WP_000477149.1 | GspH/FimT family pseudopilin | Machinery gene |
| Aba10324_RS08015 (Aba10324_08020) | - | 1665155..1666330 (+) | 1176 | WP_005119697.1 | thiolase family protein | - |
| Aba10324_RS08020 (Aba10324_08025) | - | 1666457..1666900 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| Aba10324_RS08025 (Aba10324_08030) | - | 1666943..1667296 (-) | 354 | WP_000457785.1 | DMT family transporter | - |
| Aba10324_RS08030 (Aba10324_08035) | - | 1667378..1667863 (-) | 486 | WP_077108858.1 | DUF934 domain-containing protein | - |
| Aba10324_RS08035 (Aba10324_08040) | - | 1667856..1669499 (-) | 1644 | WP_000281763.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19633.88 Da Isoelectric Point: 8.8196
>NTDB_id=204824 Aba10324_RS08010 WP_000477149.1 1664531..1665046(+) (fimT) [Acinetobacter baumannii strain 10324]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=204824 Aba10324_RS08010 WP_000477149.1 1664531..1665046(+) (fimT) [Acinetobacter baumannii strain 10324]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACTTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTGACTTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.976 |
97.076 |
0.427 |