Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PSJM300_11260 Genome accession   CP003725
Coordinates   2476420..2477019 (-) Length   199 a.a.
NCBI ID   AFN78316.1    Uniprot ID   -
Organism   Pseudomonas stutzeri DSM 10701     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2471420..2482019
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSJM300_11240 - 2472824..2473519 (-) 696 AFN78312.1 amino acid ABC transporter substrate-binding protein -
  PSJM300_11245 - 2473530..2474303 (-) 774 AFN78313.1 taurine ABC transporter permease -
  PSJM300_11250 - 2474300..2475046 (-) 747 AFN78314.1 ABC transporter ATP-binding protein -
  PSJM300_11255 - 2475133..2476122 (-) 990 AFN78315.1 hypothetical protein -
  PSJM300_11260 recR 2476420..2477019 (-) 600 AFN78316.1 recombination protein RecR Machinery gene
  PSJM300_11265 - 2477161..2477487 (-) 327 AFN78317.1 hypothetical protein -
  PSJM300_11270 - 2477508..2479511 (-) 2004 AFN78318.1 DNA polymerase III subunits gamma and tau -
  PSJM300_11275 - 2479593..2480735 (-) 1143 AFN78319.1 erythronate-4-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21282.68 Da        Isoelectric Point: 6.4747

>NTDB_id=20482 PSJM300_11260 AFN78316.1 2476420..2477019(-) (recR) [Pseudomonas stutzeri DSM 10701]
MSFSPLIRQLIDALRILPGVGQKTAQRMALQMLERDRSGGLRLAQALSRAMAEVGYCQQCRTLSEEELCPQCADPRRDDS
LLCIVQSPVDVFAVEQTGFRGRYFVLKGHLSPLDGLGPEAIGIPELLARVAAGSFSEVILATNPTVEGEATAHYIAQLLI
PKGLTLSRIAHGVPLGGELDLVDGGTLAHALAGRKTISL

Nucleotide


Download         Length: 600 bp        

>NTDB_id=20482 PSJM300_11260 AFN78316.1 2476420..2477019(-) (recR) [Pseudomonas stutzeri DSM 10701]
ATGAGCTTCAGTCCCCTCATCCGCCAACTCATCGATGCCCTGCGGATTCTCCCCGGCGTCGGGCAGAAGACGGCGCAGCG
CATGGCCCTGCAGATGCTGGAACGCGATCGCAGTGGTGGTCTGCGCCTGGCGCAGGCACTCAGCCGCGCCATGGCGGAGG
TGGGGTATTGCCAGCAGTGCCGGACGCTGAGCGAAGAGGAGCTGTGCCCGCAGTGCGCCGATCCACGCCGTGACGATAGC
CTGCTGTGCATCGTGCAAAGCCCGGTGGATGTCTTCGCGGTCGAGCAGACCGGCTTCCGCGGTCGCTATTTCGTGCTCAA
GGGGCATCTGTCGCCCCTCGACGGTCTCGGCCCGGAGGCCATCGGTATTCCGGAATTGCTGGCGCGAGTCGCTGCAGGTT
CGTTCAGCGAAGTGATCCTCGCCACCAACCCGACCGTGGAAGGTGAAGCCACCGCCCACTACATCGCGCAACTGCTGATC
CCCAAGGGCCTGACCCTCAGCCGTATCGCCCATGGCGTACCGCTGGGCGGCGAGCTGGATCTCGTCGACGGCGGAACCCT
GGCTCATGCATTGGCCGGGCGCAAGACCATCAGTCTCTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.739

100

0.477
  recR Bacillus subtilis subsp. subtilis str. 168

47.98

99.497

0.477

Multiple sequence alignment