Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PSJM300_10440 Genome accession   CP003725
Coordinates   2285445..2285951 (+) Length   168 a.a.
NCBI ID   AFN78154.1    Uniprot ID   -
Organism   Pseudomonas stutzeri DSM 10701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2280445..2290951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSJM300_10415 - 2282150..2282461 (+) 312 AFN78149.1 hypothetical protein -
  PSJM300_10420 - 2282773..2283336 (+) 564 AFN78150.1 streptothricin-acetyltransferase -
  PSJM300_10425 - 2283669..2284187 (+) 519 AFN78151.1 hypothetical protein -
  PSJM300_10430 - 2284310..2284771 (-) 462 AFN78152.1 PilT domain-containing protein -
  PSJM300_10435 - 2284807..2285010 (+) 204 AFN78153.1 hypothetical protein -
  PSJM300_10440 radC 2285445..2285951 (+) 507 AFN78154.1 DNA repair protein RadC Machinery gene
  PSJM300_10445 - 2286092..2287120 (-) 1029 AFN78155.1 alcohol dehydrogenase GroES domain-containing protein -
  PSJM300_10450 - 2287238..2287726 (-) 489 AFN78156.1 hypothetical protein -
  PSJM300_10455 - 2287846..2288664 (+) 819 AFN78157.1 micrococcal nuclease -
  PSJM300_10460 - 2288672..2289274 (-) 603 AFN78158.1 hypothetical protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18740.50 Da        Isoelectric Point: 6.2937

>NTDB_id=20480 PSJM300_10440 AFN78154.1 2285445..2285951(+) (radC) [Pseudomonas stutzeri DSM 10701]
MSRFTFTVESSLLVRDAEGHYLPATADQILEAARRVVELKVQRGAPFTAPHIVKEYLGAKLAGLEHEVFVVLFLDNQHRL
IDYLEMFRGTLDSASVYPREVVKEALKLNAAAVIFSHNHPSGHAEPSQADRTLTRKLKDALELIDVRTLDHIIVAGQEQV
SFAELGLL

Nucleotide


Download         Length: 507 bp        

>NTDB_id=20480 PSJM300_10440 AFN78154.1 2285445..2285951(+) (radC) [Pseudomonas stutzeri DSM 10701]
ATGTCTCGATTTACCTTCACCGTCGAGTCGTCCCTCCTGGTCCGTGATGCCGAAGGGCACTACCTGCCGGCGACAGCCGA
TCAGATCCTCGAAGCGGCACGCCGTGTCGTCGAACTCAAGGTCCAGCGGGGCGCACCCTTCACGGCTCCCCATATCGTCA
AGGAGTACCTGGGTGCCAAGCTCGCGGGCCTGGAGCATGAAGTCTTCGTGGTGCTGTTTCTCGACAACCAGCACCGGCTG
ATCGACTACCTCGAGATGTTCCGGGGAACCCTCGACAGCGCCTCGGTCTATCCCCGGGAGGTCGTAAAGGAAGCCCTGAA
GCTCAATGCCGCGGCGGTGATCTTCTCGCACAACCATCCGAGTGGGCATGCAGAGCCGAGCCAGGCGGACAGGACGCTGA
CCCGAAAGCTCAAGGACGCGCTGGAGCTGATTGACGTGCGCACACTCGATCACATCATCGTGGCGGGTCAGGAGCAGGTG
TCGTTTGCCGAGCTCGGGCTGTTATAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

48.571

83.333

0.405

Multiple sequence alignment