Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   AW75_RS15230 Genome accession   NZ_CP017977
Coordinates   2935554..2936159 (-) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella enterica subsp. enterica serovar Montevideo str. CDC 2012K-1544     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 2930554..2941159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW75_RS15215 (AW75_14360) helD 2930771..2932825 (-) 2055 WP_000420515.1 DNA helicase IV -
  AW75_RS15220 (AW75_14365) - 2932949..2933395 (+) 447 WP_001261222.1 YccF domain-containing protein -
  AW75_RS15225 (AW75_14370) yccS 2933414..2935567 (+) 2154 WP_000950879.1 YccS family putative transporter -
  AW75_RS15230 (AW75_14375) sxy/tfoX 2935554..2936159 (-) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  AW75_RS15235 (AW75_14380) sulA 2936376..2936885 (+) 510 WP_000288730.1 SOS-induced cell division inhibitor SulA -
  AW75_RS15240 (AW75_14385) ompA 2937242..2938294 (+) 1053 WP_001562588.1 porin OmpA -
  AW75_RS15245 (AW75_14390) matP 2938366..2938818 (-) 453 WP_000877172.1 macrodomain Ter protein MatP -
  AW75_RS15250 (AW75_14395) - 2939004..2940764 (+) 1761 WP_000156463.1 Lon protease family protein -

Sequence


Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=204796 AW75_RS15230 WP_001202375.1 2935554..2936159(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Montevideo str. CDC 2012K-1544]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=204796 AW75_RS15230 WP_001202375.1 2935554..2936159(-) (sxy/tfoX) [Salmonella enterica subsp. enterica serovar Montevideo str. CDC 2012K-1544]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751


Multiple sequence alignment