Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdL   Type   Machinery gene
Locus tag   AF_RS01730 Genome accession   NC_000917
Coordinates   308760..310388 (-) Length   542 a.a.
NCBI ID   WP_148183415.1    Uniprot ID   A0A075WDC6
Organism   Archaeoglobus fulgidus DSM 4304     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 303760..315388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AF_RS01705 (AF0333) - 304592..306085 (+) 1494 WP_048064616.1 4-hydroxyphenylacetate 3-hydroxylase family protein -
  AF_RS01710 (AF0334) - 306069..306314 (+) 246 WP_010877841.1 hypothetical protein -
  AF_RS01715 (AF0335) - 306406..307143 (+) 738 WP_010877842.1 DNA polymerase sliding clamp -
  AF_RS01720 (AF0336) priL 307147..308259 (+) 1113 WP_010877843.1 DNA primase regulatory subunit PriL -
  AF_RS01725 (AF0337) - 308265..308483 (-) 219 WP_010877844.1 histone family protein -
  AF_RS01730 (AF0338) epdL 308760..310388 (-) 1629 WP_148183415.1 type II/IV secretion system ATPase subunit Machinery gene
  AF_RS01735 (AF0339) - 310494..311636 (+) 1143 WP_048064618.1 iron-containing alcohol dehydrogenase -
  AF_RS01740 (AF0340) - 311646..313442 (+) 1797 WP_010877847.1 aldehyde ferredoxin oxidoreductase family protein -
  AF_RS01745 (AF0341) - 313452..313598 (-) 147 WP_010877848.1 rubredoxin-like domain-containing protein -
  AF_RS01750 (AF0342) - 313595..314047 (-) 453 WP_010877849.1 rubrerythrin family protein -
  AF_RS01755 (AF0343) wrbA 314185..314760 (-) 576 WP_010877850.1 NAD(P)H:quinone oxidoreductase -
  AF_RS01760 (AF0344) - 314765..315142 (-) 378 WP_010877851.1 desulfoferrodoxin family protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62552.81 Da        Isoelectric Point: 6.8740

>NTDB_id=20476 AF_RS01730 WP_148183415.1 308760..310388(-) (epdL) [Archaeoglobus fulgidus DSM 4304]
MPTLRFSFKKKEDEVPRRTAVFEIIKKGAKEEFLGEETYRTLSKRLSQEFEPPEGWIEVEGYPVYGRFVISSVHILYNEE
DNEFIYHVNEPKLSEEEEKIVKNVIGRLEYYAANPKEIGDKVGTLKKKIDSILEAYRVNLEGSDYFRVLYHIFKRTILYG
KITPIMYDPMIEDISCNGYGKYIYIFHRKYTNLRTNVIFDDPDELDSFVVNLAQKCGKHISIAEPMVDATMPDGSRIQMT
LGREVTDHGSTFTIRKFREEPVTPIDLIAWKTFSSEQMAYLWLCIENKKSLIFAGGTASGKTTSMNAISLFIPRRSKIVT
IEDTRELMLPHENWIPAVTRDAFHGEKGAVDMYDLLRAALRQRPEYIIVGEVRGREALTLFQAMATGHTTYSTLHADSIS
GAIHRLENPPIGVPRPMLEALDIISIQAQTYVGDRRVRRNMEIAEIVGLDAHTKMLRTSTVFQWDSVKDEHAMVGTSKAL
EEIRRQRGWSVRELNEELERRRRVLEFMLSNGIRMFKDVSAVIHTYQVNPERAMKRLGVEEL

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=20476 AF_RS01730 WP_148183415.1 308760..310388(-) (epdL) [Archaeoglobus fulgidus DSM 4304]
ATGCCCACTCTTCGCTTCAGCTTCAAAAAGAAGGAGGATGAAGTTCCAAGAAGAACTGCTGTTTTCGAGATAATAAAAAA
AGGTGCAAAGGAGGAGTTTCTCGGTGAGGAAACCTATAGAACACTCTCAAAGAGGCTTTCGCAGGAATTTGAACCTCCTG
AAGGGTGGATTGAGGTTGAGGGTTATCCCGTTTACGGCAGATTCGTAATCTCAAGCGTTCACATCCTCTATAATGAGGAA
GATAACGAGTTCATTTATCACGTCAACGAGCCCAAGCTGAGTGAAGAGGAGGAGAAAATTGTCAAGAATGTGATCGGCAG
GCTTGAGTACTATGCCGCAAACCCCAAGGAAATTGGGGACAAAGTTGGAACGCTCAAAAAGAAAATAGATTCCATCCTTG
AGGCTTACAGAGTAAACCTTGAAGGTTCGGATTACTTCAGAGTTCTTTACCACATTTTCAAGCGAACTATCCTTTACGGC
AAGATAACACCCATAATGTACGACCCGATGATCGAGGACATTTCATGCAACGGATACGGCAAGTACATCTACATCTTCCA
CCGCAAGTACACAAACCTCCGCACCAACGTCATCTTCGACGATCCGGATGAGCTTGACAGCTTCGTTGTCAACCTCGCCC
AGAAGTGCGGAAAGCACATCAGCATCGCAGAGCCAATGGTTGACGCGACAATGCCCGACGGCAGCAGAATCCAGATGACT
TTGGGGAGGGAGGTGACCGACCACGGCTCGACCTTCACCATAAGAAAGTTCCGCGAAGAGCCCGTCACTCCCATCGACCT
AATAGCATGGAAAACCTTCAGCAGCGAGCAGATGGCATATCTATGGCTCTGCATCGAGAACAAGAAGTCACTAATCTTTG
CCGGCGGCACTGCGAGCGGTAAAACCACTTCGATGAACGCCATCTCGCTCTTCATCCCCCGCCGCTCCAAGATAGTGACA
ATTGAAGACACAAGAGAGCTTATGCTCCCCCACGAGAACTGGATTCCTGCTGTAACAAGAGATGCCTTCCACGGAGAGAA
GGGAGCAGTTGACATGTACGATTTGCTCAGAGCGGCATTGAGGCAGAGGCCTGAGTACATAATAGTCGGTGAGGTTAGAG
GGAGGGAGGCTTTAACGCTCTTCCAGGCGATGGCTACAGGCCACACAACCTACTCAACACTGCACGCTGACAGCATAAGC
GGTGCGATACACAGGCTTGAAAACCCGCCAATTGGAGTGCCGAGGCCGATGCTCGAGGCTCTTGACATTATAAGCATCCA
GGCCCAAACTTACGTTGGGGACAGGAGAGTTAGGAGGAACATGGAGATTGCGGAGATTGTCGGTTTGGATGCGCACACAA
AGATGCTGAGAACCTCAACCGTATTCCAGTGGGACAGCGTTAAGGACGAGCACGCGATGGTTGGAACTTCCAAAGCTCTG
GAGGAGATAAGGAGGCAGAGAGGGTGGAGTGTGAGGGAGCTGAACGAGGAGCTTGAGAGGAGGAGGAGAGTGCTGGAGTT
TATGCTCTCCAACGGAATAAGAATGTTCAAAGACGTCTCTGCGGTCATACATACCTACCAGGTGAATCCCGAGAGGGCGA
TGAAGCGCCTCGGCGTTGAGGAACTCTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(168-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A075WDC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdL Methanoculleus thermophilus strain DSM 2373

52.823

91.513

0.483

Multiple sequence alignment