Detailed information NTG0204664

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CJZ69_RS05230
• Genome accession: NZ_CP022959
• Coordinates: 1056331..1057323 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli ATCC 8739
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1051331..1062323

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJZ69_RS05200 (CJZ69_05390)	ispD	1051392..1052102 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CJZ69_RS05205 (CJZ69_05395)	ispF	1052102..1052581 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CJZ69_RS05210 (CJZ69_05400)	truD	1052578..1053627 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
CJZ69_RS05215 (CJZ69_05405)	surE	1053608..1054369 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CJZ69_RS05220 (CJZ69_05410)	pcm	1054363..1054989 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CJZ69_RS05225 (CJZ69_05415)	nlpD	1055174..1056268 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CJZ69_RS05230 (CJZ69_05420)	rpoS	1056331..1057323 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CJZ69_RS05235 (CJZ69_05425)	ygbN	1057417..1058781 (-)	1365	WP_000104462.1	GntP family transporter	-
CJZ69_RS05240 (CJZ69_05430)	ygbM	1058870..1059646 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
CJZ69_RS05245 (CJZ69_05435)	ygbL	1059651..1060289 (-)	639	WP_001278994.1	aldolase	-
CJZ69_RS05250 (CJZ69_05440)	otnK	1060286..1061548 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=204664 CJZ69_RS05230 WP_000081550.1 1056331..1057323(+) (rpoS) [Escherichia coli ATCC 8739]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=204664 CJZ69_RS05230 WP_000081550.1 1056331..1057323(+) (rpoS) [Escherichia coli ATCC 8739]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715