Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CJZ79_RS06465 Genome accession   NZ_CP022912
Coordinates   1232792..1233307 (+) Length   171 a.a.
NCBI ID   WP_047646043.1    Uniprot ID   -
Organism   Escherichia coli O6:H16 strain 2011EL-1370-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227792..1238307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ79_RS06420 csrA 1228379..1228564 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CJZ79_RS06450 yqaB 1230022..1230588 (+) 567 WP_000273289.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CJZ79_RS06455 yqaA 1230585..1231013 (+) 429 WP_001287454.1 YqaA family protein -
  CJZ79_RS06460 gshA 1231086..1232642 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CJZ79_RS06465 luxS 1232792..1233307 (+) 516 WP_047646043.1 S-ribosylhomocysteine lyase Regulator
  CJZ79_RS06470 emrB 1233371..1234909 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CJZ79_RS06475 emrA 1234926..1236098 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CJZ79_RS06480 emrR 1236225..1236755 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CJZ79_RS06485 ygaH 1236846..1237181 (-) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  CJZ79_RS06490 ygaZ 1237171..1237908 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19448.25 Da        Isoelectric Point: 5.0362

>NTDB_id=204591 CJZ79_RS06465 WP_047646043.1 1232792..1233307(+) (luxS) [Escherichia coli O6:H16 strain 2011EL-1370-2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDMLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=204591 CJZ79_RS06465 WP_047646043.1 1232792..1233307(+) (luxS) [Escherichia coli O6:H16 strain 2011EL-1370-2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACATGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725

Multiple sequence alignment