Detailed information NTG0204588

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CJZ79_RS06185
• Genome accession: NZ_CP022912
• Coordinates: 1179999..1180991 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O6:H16 strain 2011EL-1370-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1174999..1185991

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJZ79_RS06155	ispD	1175122..1175771 (+)	650	Protein_1136	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CJZ79_RS06160	ispF	1175771..1176250 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CJZ79_RS06165	truD	1176247..1177296 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
CJZ79_RS06170	surE	1177277..1178038 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CJZ79_RS06175	pcm	1178032..1178658 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CJZ79_RS06180	nlpD	1178843..1179936 (+)	1094	Protein_1141	murein hydrolase activator NlpD	-
CJZ79_RS06185	rpoS	1179999..1180991 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CJZ79_RS06190	ygbN	1181085..1182447 (-)	1363	Protein_1143	GntP family transporter	-
CJZ79_RS06195	ygbM	1182536..1183312 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
CJZ79_RS06200	ygbL	1183317..1183955 (-)	639	WP_001278994.1	aldolase	-
CJZ79_RS06205	otnK	1183952..1185214 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=204588 CJZ79_RS06185 WP_000081550.1 1179999..1180991(+) (rpoS) [Escherichia coli O6:H16 strain 2011EL-1370-2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=204588 CJZ79_RS06185 WP_000081550.1 1179999..1180991(+) (rpoS) [Escherichia coli O6:H16 strain 2011EL-1370-2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715