Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PPYC2_RS22865 Genome accession   NZ_CP017968
Coordinates   5136151..5137104 (-) Length   317 a.a.
NCBI ID   WP_023990357.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain YC0573     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5131151..5142104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPYC2_RS22840 (PPYC2_04330) - 5131498..5132409 (-) 912 WP_071558229.1 aldo/keto reductase -
  PPYC2_RS22845 (PPYC2_04325) - 5132690..5133433 (-) 744 WP_071558228.1 alpha/beta hydrolase -
  PPYC2_RS22850 (PPYC2_04320) - 5133467..5134447 (-) 981 WP_071558227.1 siderophore ABC transporter substrate-binding protein -
  PPYC2_RS22855 (PPYC2_04315) - 5134460..5135218 (-) 759 WP_071558226.1 ABC transporter ATP-binding protein -
  PPYC2_RS22860 (PPYC2_04310) - 5135212..5136161 (-) 950 Protein_4508 iron chelate uptake ABC transporter family permease subunit -
  PPYC2_RS22865 (PPYC2_04305) ceuB 5136151..5137104 (-) 954 WP_023990357.1 ABC transporter permease Machinery gene
  PPYC2_RS22870 (PPYC2_04300) - 5137433..5138110 (+) 678 WP_023990358.1 response regulator transcription factor -
  PPYC2_RS22875 (PPYC2_04295) - 5138107..5139024 (+) 918 WP_068938310.1 sensor histidine kinase -
  PPYC2_RS22880 (PPYC2_04290) - 5139133..5139810 (+) 678 WP_071558225.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34746.75 Da        Isoelectric Point: 9.9012

>NTDB_id=204583 PPYC2_RS22865 WP_023990357.1 5136151..5137104(-) (ceuB) [Paenibacillus polymyxa strain YC0573]
MKLRYLILAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSIPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=204583 PPYC2_RS22865 WP_023990357.1 5136151..5137104(-) (ceuB) [Paenibacillus polymyxa strain YC0573]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATCGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGGCTCATTATGCAGCAGCTTACCCGGAACCGATTTGTATCTCCCACCACTGCA
GGGACGATGGATGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCAGCAGGATTTTGGACGAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGAGACTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTATTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGAACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTGGTCAGCATGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTTTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment