Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CJZ79_RS00665 Genome accession   NZ_CP022912
Coordinates   125183..125659 (-) Length   158 a.a.
NCBI ID   WP_032328266.1    Uniprot ID   -
Organism   Escherichia coli O6:H16 strain 2011EL-1370-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 120183..130659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ79_RS27125 rhuM 121317..121478 (-) 162 Protein_114 RhuM family protein -
  CJZ79_RS00630 - 121716..122554 (-) 839 Protein_115 DUF4942 domain-containing protein -
  CJZ79_RS00635 - 122651..122848 (-) 198 WP_000839275.1 DUF957 domain-containing protein -
  CJZ79_RS00640 - 122860..123348 (-) 489 WP_000761693.1 DUF5983 family protein -
  CJZ79_RS00645 - 123345..123722 (-) 378 WP_000854743.1 TA system toxin CbtA family protein -
  CJZ79_RS00650 - 123812..124180 (-) 369 WP_001285298.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CJZ79_RS00655 - 124230..124874 (-) 645 WP_000086754.1 hypothetical protein -
  CJZ79_RS00660 - 124893..125114 (-) 222 WP_000692295.1 DUF987 domain-containing protein -
  CJZ79_RS00665 radC 125183..125659 (-) 477 WP_032328266.1 RadC family protein Machinery gene
  CJZ79_RS00670 - 125674..126159 (-) 486 WP_000206660.1 antirestriction protein -
  CJZ79_RS00675 - 126251..127072 (-) 822 WP_001706654.1 DUF932 domain-containing protein -
  CJZ79_RS00685 - 127398..130244 (-) 2847 WP_000820580.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17662.29 Da        Isoelectric Point: 7.2020

>NTDB_id=204567 CJZ79_RS00665 WP_032328266.1 125183..125659(-) (radC) [Escherichia coli O6:H16 strain 2011EL-1370-2]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILSMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVILAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=204567 CJZ79_RS00665 WP_032328266.1 125183..125659(-) (radC) [Escherichia coli O6:H16 strain 2011EL-1370-2]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAGCATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTTCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCCGCCGTGATACTGGCACA
CAACCACCCGTCCGGTGAAGTCACTCCCAGTAAGGCAGACCGGCTTATTACGGAACGTCTGGTTCAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTATTCTCCTTTGCCGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

56.637

71.519

0.405

Multiple sequence alignment