Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   PPYC1_RS20735 Genome accession   NZ_CP017967
Coordinates   4724039..4724992 (-) Length   317 a.a.
NCBI ID   WP_071643047.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain YC0136     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4719039..4729992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PPYC1_RS20710 (PPYC1_03935) - 4719386..4720297 (-) 912 WP_071643039.1 aldo/keto reductase -
  PPYC1_RS20715 (PPYC1_03930) - 4720577..4721320 (-) 744 WP_071643041.1 alpha/beta hydrolase -
  PPYC1_RS20720 (PPYC1_03925) - 4721354..4722334 (-) 981 WP_071643043.1 siderophore ABC transporter substrate-binding protein -
  PPYC1_RS20725 (PPYC1_03920) - 4722347..4723105 (-) 759 WP_071643045.1 ABC transporter ATP-binding protein -
  PPYC1_RS20730 (PPYC1_03915) - 4723099..4724049 (-) 951 WP_013312013.1 iron chelate uptake ABC transporter family permease subunit -
  PPYC1_RS20735 (PPYC1_03910) ceuB 4724039..4724992 (-) 954 WP_071643047.1 ABC transporter permease Machinery gene
  PPYC1_RS20740 (PPYC1_03905) - 4725322..4725999 (+) 678 WP_071643048.1 response regulator transcription factor -
  PPYC1_RS20745 (PPYC1_03900) - 4725996..4726913 (+) 918 WP_071644404.1 sensor histidine kinase -
  PPYC1_RS20750 (PPYC1_03895) - 4727022..4727699 (+) 678 WP_071643051.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34700.66 Da        Isoelectric Point: 9.9012

>NTDB_id=204553 PPYC1_RS20735 WP_071643047.1 4724039..4724992(-) (ceuB) [Paenibacillus polymyxa strain YC0136]
MKLRYLILAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSVPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSVYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=204553 PPYC1_RS20735 WP_071643047.1 4724039..4724992(-) (ceuB) [Paenibacillus polymyxa strain YC0136]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATCGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGTTTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGGCTCATTATGCAGCAACTTACCCGGAACCGATTTGTATCTCCCACCACTGCG
GGGACGATGGACGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATCCTGGATAAAATCCGTTTCAAGGACCCAGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTACAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGGGATTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTGTTCC
TTTGGTTGCGTTGGCGTACATATATGCGAATCGTTTCACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTATCCTCTGTTGTCATCTTAACCGTTGGGACG
ATTCCCTTTTTAGGGCTGGTTGTACCCAATCTGGTCAGCGTGTATATGGGGGATAATCTGAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGACATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTCTTGTATTTGCTGCTGAGGAGAAGGGCCTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment