Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   PSJM300_02965 Genome accession   CP003725
Coordinates   663376..664974 (-) Length   532 a.a.
NCBI ID   AFN76671.1    Uniprot ID   -
Organism   Pseudomonas stutzeri DSM 10701     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 658376..669974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSJM300_02950 - 659012..660622 (-) 1611 AFN76668.1 two-component response regulator -
  PSJM300_02955 - 660832..661887 (+) 1056 AFN76669.1 hypothetical protein -
  PSJM300_02960 - 661923..663263 (-) 1341 AFN76670.1 two-component response regulator PilR -
  PSJM300_02965 pilS 663376..664974 (-) 1599 AFN76671.1 two-component sensor PilS Regulator
  PSJM300_02970 - 664964..665197 (-) 234 AFN76672.1 hypothetical protein -
  PSJM300_02975 - 665287..666279 (-) 993 AFN76673.1 competence protein ComL -
  PSJM300_02980 - 666700..667674 (+) 975 AFN76674.1 pseudouridine synthase -
  PSJM300_02985 - 667671..668480 (+) 810 AFN76675.1 multi-copper polyphenol oxidoreductase, laccase -
  PSJM300_02990 - 668440..669087 (-) 648 AFN76676.1 putative ubiquinone biosynthesis protein -
  PSJM300_02995 - 669137..669478 (-) 342 AFN76677.1 HIT family protein -

Sequence

Protein


Download         Length: 532 a.a.        Molecular weight: 59073.39 Da        Isoelectric Point: 8.4531

>NTDB_id=20453 PSJM300_02965 AFN76671.1 663376..664974(-) (pilS) [Pseudomonas stutzeri DSM 10701]
MGTESLALPGSQGQRILRVYHLYRIAIGLALVLLISSDLHDDLMRMRSPALFHYGAWLYLILNTLIAVLAYKPRQGLPIL
SLALMDVILLSALFYFAGGTPSGIGNLLIIAVAIANILLHGRIGLLIAAIAAIGLIYLTFYLSLGDPDASRQYPQAAALG
TLCFAAALLVQGLSRRLRVSEELALRRAEEVANLEALNALILQRMRTGILVLDSRQRVLLANQGALELLGQESLVGERLA
PRCPELLKAMQRWRDNPTLRPQNLKATADGPILQPSFAALQNGAEQNVLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESDSLDQSDQRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFASEFRGGLAPN
QTLHLETIGSSLQTRMDPNQLIQVLTNLVQNGLRYSGQTHAQAQVWLRLFRDTASDLPVVEVIDDGPGVPVEQEQLVFEP
FFTTENKGTGLGLYISRELCESNRAWLDYRKRDEQSGSCFRITFAHPRKRAE

Nucleotide


Download         Length: 1599 bp        

>NTDB_id=20453 PSJM300_02965 AFN76671.1 663376..664974(-) (pilS) [Pseudomonas stutzeri DSM 10701]
GTGGGCACTGAGAGCCTGGCGCTTCCGGGTTCCCAAGGGCAGCGCATCCTTCGCGTCTACCACCTCTATCGCATCGCGAT
CGGCCTGGCGCTGGTGCTGCTGATCAGCAGCGATCTGCATGACGATCTGATGCGCATGCGCAGCCCGGCGCTGTTCCACT
ACGGCGCCTGGCTCTACCTGATTCTCAACACCCTGATCGCCGTCCTGGCATACAAACCCAGGCAGGGGCTGCCCATTCTC
AGCCTGGCGCTGATGGACGTGATCCTGCTTTCCGCGTTGTTCTATTTCGCCGGCGGCACCCCGAGCGGGATCGGCAACCT
GCTGATCATCGCCGTGGCCATCGCCAACATCCTGCTGCATGGCCGCATCGGCCTTCTCATCGCCGCTATCGCCGCCATCG
GCCTGATCTACCTGACCTTCTACCTCAGCCTGGGTGATCCGGACGCCAGCCGCCAGTATCCCCAGGCCGCGGCACTGGGC
ACGCTGTGTTTCGCCGCGGCGCTGCTGGTCCAGGGGCTGAGCCGGCGCCTCAGGGTCAGTGAAGAACTGGCCCTGAGGCG
CGCCGAGGAAGTCGCCAATCTGGAAGCGCTCAACGCGCTGATCCTGCAGCGCATGCGCACCGGGATCCTGGTGCTCGATT
CGCGCCAACGTGTATTGCTCGCCAACCAGGGCGCCCTGGAGTTGCTAGGACAGGAATCGCTGGTCGGCGAGCGCCTGGCA
CCCCGCTGCCCGGAACTGCTCAAGGCCATGCAACGCTGGCGCGACAACCCGACCCTGCGCCCACAGAATCTCAAGGCGAC
AGCCGACGGGCCCATCCTGCAACCCAGCTTCGCGGCCCTGCAGAACGGCGCAGAACAGAACGTGCTGGTGTTTCTCGAAG
ACATCTCGCAGATCGCTCAGAAGGCTCAGCAACTGAAGCTCGCGTCCCTCGGTCGCCTGACCGCGAGCATCGCCCACGAA
ATCCGCAACCCGCTCGGCGCCATCAGCCACGCCGCGCAACTGCTGCAGGAATCCGACTCGCTCGATCAGAGCGATCAACG
GCTGGCGCAGATCATCCAGGACCATTCGCGGCGAATGAACCTGGTCATCGAGAACGTGCTGCAGCTCTCACGTCGCCGGC
AGGCCGAGCCGCAGCTGCTGGACCTGAAGTACTGGCTGCATCGCTTCGCCAGCGAGTTCCGCGGCGGCCTCGCCCCCAAC
CAGACGCTGCATCTGGAAACCATCGGCAGCTCACTGCAGACCCGCATGGACCCGAACCAGCTGATCCAGGTGCTGACCAA
CCTCGTCCAGAACGGCCTGCGCTACAGCGGCCAGACGCATGCACAGGCGCAGGTATGGTTGCGTCTGTTTCGCGACACCG
CCAGCGACCTGCCCGTGGTGGAGGTGATCGATGATGGCCCAGGCGTACCCGTCGAGCAGGAACAACTGGTTTTCGAACCC
TTCTTCACCACCGAAAACAAGGGAACCGGCCTGGGACTCTATATCTCCCGCGAGCTGTGCGAGAGCAACCGGGCATGGCT
CGATTATCGGAAGCGCGACGAACAGAGCGGCAGCTGCTTTCGCATCACCTTCGCCCACCCCCGCAAAAGGGCCGAATAA

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-524)

PAS domain (PAS_8)

(202-247)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.163

99.436

0.658

Multiple sequence alignment