Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   b0959 Genome accession   NC_000913
Coordinates   1021138..1021767 (+) Length   209 a.a.
NCBI ID   NP_415479.1    Uniprot ID   P75869
Organism   Escherichia coli str. K-12 substr. MG1655     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1016138..1026767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  b0955 ycbZ 1016539..1018299 (-) 1761 NP_415475.1 putative ATP-dependent protease YcbZ -
  b0956 matP 1018485..1018937 (+) 453 NP_415476.1 macrodomain Ter protein -
  b0957 ompA 1019013..1020053 (-) 1041 NP_415477.1 outer membrane protein A -
  b0958 sulA 1020410..1020919 (-) 510 NP_415478.1 cell division inhibitor SulA -
  b0959 sxy/tfoX 1021138..1021767 (+) 630 NP_415479.1 transcriptional coactivator for CRP Regulator
  b0960 yccS 1021730..1023883 (-) 2154 NP_415480.2 putative transporter YccS -
  b0961 yccF 1023902..1024348 (-) 447 NP_415481.1 PF03733 family inner membrane protein YccF -
  b0962 helD 1024471..1026525 (+) 2055 NP_415482.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=20452 b0959 NP_415479.1 1021138..1021767(+) (sxy/tfoX) [Escherichia coli str. K-12 substr. MG1655]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=20452 b0959 NP_415479.1 1021138..1021767(+) (sxy/tfoX) [Escherichia coli str. K-12 substr. MG1655]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P75869

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment