Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   BME96_RS09360 Genome accession   NZ_CP017962
Coordinates   1778270..1779997 (+) Length   575 a.a.
NCBI ID   WP_071648949.1    Uniprot ID   A0AAC9J025
Organism   Virgibacillus halodenitrificans strain PDB-F2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1773270..1784997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BME96_RS09335 (BME96_09235) - 1774520..1774753 (+) 234 WP_019378274.1 exodeoxyribonuclease VII small subunit -
  BME96_RS09340 (BME96_09240) - 1774754..1775638 (+) 885 WP_019378275.1 polyprenyl synthetase family protein -
  BME96_RS09345 (BME96_09245) - 1776321..1776902 (+) 582 WP_019378276.1 hypothetical protein -
  BME96_RS09350 (BME96_09250) - 1776920..1777753 (+) 834 WP_019378277.1 TlyA family RNA methyltransferase -
  BME96_RS09355 (BME96_09255) ahrC 1777791..1778240 (+) 450 WP_019378278.1 transcriptional regulator AhrC/ArgR -
  BME96_RS09360 (BME96_09260) recN 1778270..1779997 (+) 1728 WP_071648949.1 DNA repair protein RecN Machinery gene
  BME96_RS09365 (BME96_09265) spoIVB 1780231..1781490 (+) 1260 WP_033354082.1 SpoIVB peptidase -
  BME96_RS09370 (BME96_09270) spo0A 1781753..1782532 (+) 780 WP_019378282.1 sporulation transcription factor Spo0A -
  BME96_RS09375 (BME96_09275) - 1782644..1783990 (-) 1347 WP_019378283.1 aspartate kinase -
  BME96_RS09380 (BME96_09280) - 1784151..1784381 (-) 231 WP_019378284.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 65715.50 Da        Isoelectric Point: 5.2312

>NTDB_id=204509 BME96_RS09360 WP_071648949.1 1778270..1779997(+) (recN) [Virgibacillus halodenitrificans strain PDB-F2]
MLTELSIHDFAIIEDISITFNEGLTVLTGETGAGKSIIIDAVQLLAGGRGSVEFVRHGTKKAEIEGLFIIDSDTHPIYKV
GKEYGIEISDKQIVLQRTITANGKSICRVNSKLVTLAILREFGKTLIDIHSQHETQSLMNPEHHIDLLDMYDAGQIRKTK
QEYRELFNKLLSLKNRYKKLSENEQEMAHRLDLLQFQLKEIEQADLAPDEDQNLEEERDSLVNYERIYQALQDGYNALYG
EQRGLEWVNKAQVALQSAATYDKFIEEKAEAISNHYYALEELTYELRNYTEMQQYSPSRLNELEGRLNEISRLKKKYGAT
VNDILEYMGKVEEEIEEITNKDSHLSKLDEEIKELEKDAYLEARQLHDLRKKAANSLTANIHKELKGLYLEKASFAISFG
EVDGYNEEKLPLHKNGFDQIRFLISTNTGEPLKELNKIASGGELSRIMLVLKKIFSRHQGVTSVIFDEVDTGVSGRVAQA
IAEKIYQISQASQVLCITHLPQVASMADTHKFIKKLEKNQRTFTSVSELTIEEQIDELSRMITGTKLTETAKEHGKEMLE
LANHYKEQKNTDKFM

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=204509 BME96_RS09360 WP_071648949.1 1778270..1779997(+) (recN) [Virgibacillus halodenitrificans strain PDB-F2]
TTGTTAACAGAACTATCTATTCATGACTTCGCGATTATTGAAGATATATCTATAACGTTTAATGAAGGACTAACAGTTCT
AACTGGTGAGACTGGTGCTGGGAAATCCATTATTATTGATGCAGTGCAGTTATTGGCTGGCGGCAGAGGATCTGTCGAAT
TTGTAAGACATGGAACTAAGAAAGCGGAGATTGAAGGCTTATTCATTATTGATTCTGACACCCATCCCATTTATAAAGTA
GGAAAAGAATATGGTATAGAAATATCTGATAAGCAGATTGTGTTACAACGCACTATTACTGCCAACGGGAAGAGTATATG
CAGGGTAAATAGTAAATTAGTTACACTTGCAATATTGAGGGAGTTTGGAAAGACACTAATTGATATTCACAGTCAGCATG
AAACGCAGTCGCTTATGAATCCTGAACATCATATCGACTTACTTGATATGTATGATGCAGGTCAAATTAGAAAAACTAAA
CAAGAATATCGAGAACTTTTTAATAAACTTTTATCCCTCAAAAACCGCTATAAGAAATTAAGTGAAAATGAACAGGAAAT
GGCTCATCGGTTAGATCTTCTTCAATTCCAACTTAAGGAAATTGAACAAGCAGATCTAGCTCCTGATGAAGATCAGAACT
TGGAAGAAGAAAGAGATTCCTTGGTTAATTATGAACGTATTTATCAAGCTTTACAGGATGGATACAATGCTTTGTATGGA
GAGCAACGAGGGCTGGAATGGGTTAATAAAGCTCAGGTGGCGCTACAATCTGCTGCTACATATGATAAATTTATTGAAGA
AAAAGCTGAAGCAATCTCTAATCACTACTATGCTTTAGAGGAATTAACTTATGAACTACGGAATTATACAGAAATGCAAC
AATACTCTCCAAGCCGGTTGAATGAACTTGAGGGTAGATTAAACGAAATCAGCCGTTTGAAAAAGAAGTATGGTGCTACG
GTAAATGATATTCTGGAATATATGGGAAAAGTAGAAGAGGAAATCGAAGAAATAACTAACAAAGATTCACACTTGTCTAA
GTTGGATGAGGAAATAAAGGAATTAGAAAAAGATGCATATTTAGAAGCAAGACAATTACATGATTTACGAAAAAAAGCAG
CCAATTCTCTAACTGCAAATATTCATAAAGAATTAAAAGGATTATATTTAGAAAAAGCCTCATTTGCGATTTCGTTTGGA
GAGGTTGATGGTTATAATGAAGAAAAGCTTCCTCTTCATAAAAATGGTTTCGATCAAATACGGTTTTTAATTTCAACAAA
TACAGGTGAACCGCTTAAAGAATTGAACAAAATTGCTTCCGGTGGAGAGCTTTCCAGAATAATGCTTGTTCTTAAAAAGA
TTTTTTCCAGACACCAAGGTGTTACAAGTGTTATTTTTGATGAAGTGGATACAGGAGTTAGTGGCAGGGTTGCACAAGCC
ATTGCTGAAAAAATATATCAAATATCACAAGCTTCGCAAGTACTGTGTATTACACACTTACCACAGGTAGCATCGATGGC
AGATACCCACAAATTTATTAAAAAACTTGAAAAAAACCAGCGCACTTTCACATCTGTCTCGGAGCTTACAATTGAGGAAC
AAATTGATGAACTTAGCAGAATGATAACCGGCACTAAGTTAACCGAGACTGCAAAAGAACATGGAAAAGAGATGCTTGAA
TTAGCAAATCATTATAAAGAGCAAAAAAATACGGATAAATTTATGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.484

99.826

0.534

Multiple sequence alignment