Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BME96_RS04795 Genome accession   NZ_CP017962
Coordinates   934962..936776 (+) Length   604 a.a.
NCBI ID   WP_071648453.1    Uniprot ID   A0AAC9J0U0
Organism   Virgibacillus halodenitrificans strain PDB-F2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 929962..941776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BME96_RS04775 (BME96_04730) - 930172..931101 (-) 930 WP_071648451.1 c-type cytochrome -
  BME96_RS04780 (BME96_04735) spxA 931469..931864 (+) 396 WP_019378978.1 transcriptional regulator SpxA -
  BME96_RS04785 (BME96_04740) mecA 932304..932999 (+) 696 WP_026041500.1 adaptor protein MecA -
  BME96_RS04790 (BME96_04745) - 933666..934856 (+) 1191 WP_071648452.1 competence protein CoiA -
  BME96_RS04795 (BME96_04750) pepF 934962..936776 (+) 1815 WP_071648453.1 oligoendopeptidase F Regulator
  BME96_RS04805 (BME96_04755) - 937926..938819 (-) 894 WP_019378858.1 ClpXP adapter SpxH family protein -
  BME96_RS04810 (BME96_04760) - 938837..939217 (-) 381 WP_019378859.1 globin -
  BME96_RS04815 (BME96_04765) - 939366..939932 (-) 567 WP_071648455.1 CYTH domain-containing protein -
  BME96_RS04820 (BME96_04770) - 940245..940853 (+) 609 WP_019378861.1 GTP pyrophosphokinase family protein -
  BME96_RS04825 (BME96_04775) - 940889..941692 (+) 804 WP_019378862.1 NAD kinase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69704.46 Da        Isoelectric Point: 4.6858

>NTDB_id=204500 BME96_RS04795 WP_071648453.1 934962..936776(+) (pepF) [Virgibacillus halodenitrificans strain PDB-F2]
MAKSKTKALPKREELPVERTWKLEDIFATDEIWEKELKQLQTDIPKIEAYQGKLAESSDQLLGVLKLQDELSERLGKLYT
YAHMRYDQDTTNSWYQGLNAQAENVLTIASSAMSFIVPEILTMEETKLKNFLEENKELQAYQKTLDEINRQRPHILSEKE
EALLAEASDPMSSASQTFGMLNNADLTFPTIKNEDGEEVDLTHGRYIGFLESKDRSVREAAFKGMYDTYGKFKNTFSSTL
GGNIKKDNFYAKVRNYESARQSALDDNNIPEKVYDNLVEAVNEKLPLLHRYAELRKKVLKLDELHMYDLFTPLVQDIDMK
IPYEEAQKNVLEALAPLGEEYVDILKEGYENRWIDVEENKGKRSGAYSSGAYGTNPYILLNWQDNVNDMFTLAHELGHSV
HSYYTRKFQPFRYGNYSIFVAEVASTTNEALLNDYMLNNVEDEKQKLYLLNHFLEGFRGTVFRQTMFAEFEHDIHVRAQN
GEALTADKLTELYYDLNKKYFGDAVVSDEEIGLEWARIPHFYYNYYVYQYATGYSAAMALSNNILHGKEGAVTRYLDFLK
AGSSDYPIEVLQKAGVDMTSKQPILDALDLFEEKLNEMEKLLLK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=204500 BME96_RS04795 WP_071648453.1 934962..936776(+) (pepF) [Virgibacillus halodenitrificans strain PDB-F2]
ATGGCAAAATCAAAAACAAAAGCACTACCAAAGCGTGAAGAACTACCAGTAGAACGCACATGGAAATTAGAGGATATTTT
CGCTACAGATGAAATATGGGAAAAAGAATTAAAACAACTACAAACTGATATTCCCAAAATAGAAGCGTATCAAGGGAAAC
TGGCTGAGTCATCCGATCAGTTGCTTGGTGTACTAAAGCTGCAAGATGAATTATCTGAGCGATTAGGAAAGCTGTATACA
TATGCGCATATGCGCTATGACCAGGATACGACCAATTCATGGTATCAAGGACTAAATGCGCAGGCTGAAAATGTACTGAC
CATCGCTTCAAGTGCAATGAGTTTTATCGTTCCGGAAATTTTAACGATGGAGGAAACGAAGCTAAAGAACTTTTTAGAAG
AGAACAAAGAGCTACAGGCATATCAAAAAACATTAGACGAAATTAATCGGCAGCGGCCACATATCTTGAGCGAAAAAGAA
GAGGCGTTACTTGCTGAAGCATCTGATCCTATGTCAAGTGCTTCTCAAACATTCGGTATGTTGAATAATGCGGATTTAAC
GTTCCCAACAATTAAAAATGAAGACGGGGAAGAAGTTGACTTAACGCATGGCAGATATATTGGTTTTCTTGAATCAAAGG
ACCGAAGCGTAAGGGAAGCAGCTTTTAAAGGAATGTATGATACCTATGGGAAATTTAAGAATACTTTTTCTTCTACACTA
GGTGGTAATATTAAGAAAGATAACTTTTATGCTAAGGTACGTAATTATGAATCTGCAAGGCAGTCTGCTTTAGATGATAA
TAATATACCTGAAAAAGTGTACGATAATTTAGTTGAAGCTGTTAATGAAAAACTTCCATTACTTCATCGCTATGCGGAAC
TAAGAAAGAAAGTATTAAAACTCGATGAATTGCATATGTACGATCTATTTACACCACTTGTCCAGGATATAGATATGAAG
ATTCCATATGAAGAAGCACAGAAAAATGTTTTAGAAGCACTCGCTCCACTTGGAGAAGAATATGTAGATATTCTTAAAGA
AGGTTATGAGAATCGTTGGATTGATGTGGAGGAAAATAAAGGAAAACGAAGTGGTGCTTATTCTTCAGGAGCATATGGTA
CCAACCCATATATATTATTAAATTGGCAGGATAACGTAAATGATATGTTTACACTAGCTCACGAGCTCGGGCATTCGGTT
CATAGTTACTATACACGTAAATTTCAGCCATTCCGTTATGGAAACTATTCTATTTTTGTGGCAGAGGTTGCATCCACAAC
GAATGAAGCTTTGTTAAATGATTATATGTTGAACAATGTAGAGGATGAAAAACAAAAACTCTATTTGTTAAATCACTTTT
TAGAAGGATTCCGTGGTACTGTATTCCGTCAGACGATGTTTGCAGAATTTGAACATGATATTCATGTAAGAGCACAAAAT
GGCGAAGCTTTAACTGCTGATAAGTTAACCGAACTTTATTATGATCTTAACAAAAAATACTTCGGTGATGCAGTCGTTTC
AGATGAGGAAATCGGCTTAGAATGGGCGAGAATTCCACATTTTTATTACAATTACTATGTGTATCAATATGCCACAGGTT
ATTCTGCTGCAATGGCCCTATCAAATAATATTTTACATGGTAAAGAAGGAGCTGTAACTCGTTACCTTGATTTTCTGAAG
GCGGGAAGTAGTGACTATCCAATCGAGGTACTTCAAAAAGCAGGTGTGGATATGACATCAAAACAACCTATTCTTGATGC
ACTGGATCTATTCGAAGAAAAACTAAATGAGATGGAAAAACTTTTATTGAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(210-589)

Oligopeptidase F (Peptidase_M3_N)

(119-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.747

98.179

0.488

Multiple sequence alignment