Detailed information NTG0204433

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BAMY_RS18040
• Genome accession: NZ_CP017953
• Coordinates: 3606195..3607340 (+)
• Length: 381 a.a.
• NCBI ID: WP_081364451.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Y14
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3601195..3612340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMY_RS18020 (BAMY_17630)	-	3601669..3602385 (-)	717	WP_025853599.1	Crp/Fnr family transcriptional regulator	-
BAMY_RS18025 (BAMY_17635)	narK	3602483..3603673 (-)	1191	WP_025853600.1	nitrate transporter NarK	-
BAMY_RS18030 (BAMY_17640)	argS	3603808..3605478 (-)	1671	WP_025853601.1	arginine--tRNA ligase	-
BAMY_RS18035 (BAMY_17645)	-	3605475..3605903 (-)	429	WP_003151069.1	DUF1934 domain-containing protein	-
BAMY_RS18040 (BAMY_17650)	rapF	3606195..3607340 (+)	1146	WP_081364451.1	Rap family tetratricopeptide repeat protein	Regulator
BAMY_RS20150	-	3607324..3607443 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
BAMY_RS18045 (BAMY_17655)	speB	3607566..3608003 (-)	438	Protein_3498	agmatinase	-
BAMY_RS18050 (BAMY_17660)	-	3608165..3609592 (-)	1428	WP_071543386.1	DUF885 family protein	-
BAMY_RS18055 (BAMY_17665)	-	3609593..3610933 (-)	1341	WP_025853604.1	MATE family efflux transporter	-
BAMY_RS18060 (BAMY_17670)	-	3610930..3611985 (-)	1056	WP_071543387.1	SagB/ThcOx family dehydrogenase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45782.29 Da
• Isoelectric Point: 5.0694

>NTDB_id=204433 BAMY_RS18040 WP_081364451.1 3606195..3607340(+) (rapF) [Bacillus amyloliquefaciens strain Y14]
MASVLSSSAIGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=204433 BAMY_RS18040 WP_081364451.1 3606195..3607340(+) (rapF) [Bacillus amyloliquefaciens strain Y14]
GTGGCGAGTGTTTTATCGTCTTCAGCGATTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGATTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGCCTGGAAGATGACCAGGATCTTCACCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.341	100	0.703
rapC	Bacillus subtilis subsp. subtilis str. 168	53.158	99.738	0.53