Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PSJM300_02305 Genome accession   CP003725
Coordinates   514017..514691 (+) Length   224 a.a.
NCBI ID   AFN76541.1    Uniprot ID   -
Organism   Pseudomonas stutzeri DSM 10701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 509017..519691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSJM300_02290 - 509615..512191 (-) 2577 AFN76538.1 phosphomannomutase -
  PSJM300_02295 dut 512222..512677 (-) 456 AFN76539.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  PSJM300_02300 - 512683..513897 (-) 1215 AFN76540.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase -
  PSJM300_02305 radC 514017..514691 (+) 675 AFN76541.1 hypothetical protein Machinery gene
  PSJM300_02310 - 514692..516077 (-) 1386 AFN76542.1 hypothetical protein -
  PSJM300_02315 - 516325..517926 (+) 1602 AFN76543.1 chemotaxis transducer -
  PSJM300_02320 - 517902..518648 (-) 747 AFN76544.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24921.62 Da        Isoelectric Point: 7.5580

>NTDB_id=20443 PSJM300_02305 AFN76541.1 514017..514691(+) (radC) [Pseudomonas stutzeri DSM 10701]
MSIRNWPAAERPREKLLEQGAFALSDAELLAIFLRTGVAGKSAVDLARQLLSEFGSLRALLEADLPQFSQHLGLGPAKFA
QLQAVLEMARRHLAERIRRDSALESPQAVRDYLKARLRHEPHELFGCLFLDSKHRVLAFEVLFQGTIDGASVYPRQVVKR
ALAQNAAAVILTHNHPSGVAEPSQADRQLTQRLKDALAYIDVRVLDHFIVGDGEPLSMAEYGWV

Nucleotide


Download         Length: 675 bp        

>NTDB_id=20443 PSJM300_02305 AFN76541.1 514017..514691(+) (radC) [Pseudomonas stutzeri DSM 10701]
ATGAGCATTCGTAACTGGCCGGCGGCGGAGCGGCCGCGGGAAAAGCTTCTCGAACAGGGCGCATTCGCGCTTTCCGACGC
CGAATTGCTGGCGATATTCCTGCGTACCGGGGTGGCCGGCAAGAGCGCGGTGGACCTGGCGCGCCAGCTGCTGAGCGAGT
TCGGCAGCCTGCGCGCGTTGCTGGAAGCGGATCTGCCTCAGTTCAGCCAGCACCTGGGGCTTGGTCCGGCCAAGTTCGCC
CAGTTGCAGGCCGTGCTGGAGATGGCCCGGAGGCACCTGGCCGAGCGTATCCGGCGCGATTCGGCGCTGGAAAGCCCGCA
GGCGGTTCGCGACTACCTCAAGGCGCGACTGCGGCACGAGCCGCACGAACTGTTCGGCTGCCTGTTCCTCGATTCCAAGC
ACCGCGTGCTGGCGTTCGAGGTGCTGTTTCAGGGCACCATCGACGGTGCCAGCGTCTACCCCAGGCAGGTGGTCAAGCGC
GCGCTGGCGCAGAATGCGGCGGCGGTGATCCTGACGCACAACCATCCCTCCGGTGTCGCCGAACCGAGCCAGGCGGATCG
GCAACTGACCCAGCGTCTCAAGGATGCGCTGGCCTACATCGATGTGCGCGTGCTCGATCATTTCATCGTCGGCGATGGCG
AGCCGTTGTCCATGGCCGAGTACGGGTGGGTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(3-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.282

93.304

0.46

Multiple sequence alignment