Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BAMY_RS15200 Genome accession   NZ_CP017953
Coordinates   3052496..3053140 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus amyloliquefaciens strain Y14     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3047496..3058140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS15165 (BAMY_14840) - 3048681..3049112 (+) 432 WP_025853921.1 Na(+)/H(+) antiporter subunit B -
  BAMY_RS15170 (BAMY_14845) - 3049112..3049453 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BAMY_RS15175 (BAMY_14850) - 3049446..3050927 (+) 1482 WP_025853920.1 Na+/H+ antiporter subunit D -
  BAMY_RS15180 (BAMY_14855) - 3050933..3051409 (+) 477 WP_025853919.1 Na+/H+ antiporter subunit E -
  BAMY_RS15185 (BAMY_14860) - 3051409..3051693 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BAMY_RS15190 (BAMY_14865) mnhG 3051677..3052051 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BAMY_RS15195 (BAMY_14870) - 3052091..3052474 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  BAMY_RS15200 (BAMY_14875) comA 3052496..3053140 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  BAMY_RS15205 (BAMY_14880) - 3053221..3055520 (-) 2300 Protein_2932 histidine kinase -
  BAMY_RS19895 comX 3055534..3055707 (-) 174 WP_102422026.1 competence pheromone ComX -
  BAMY_RS15215 (BAMY_14885) - 3055676..3056536 (-) 861 WP_180997900.1 polyprenyl synthetase family protein -
  BAMY_RS15220 (BAMY_14890) degQ 3056744..3056884 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BAMY_RS15230 (BAMY_14895) - 3057350..3057691 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=204422 BAMY_RS15200 WP_003152052.1 3052496..3053140(-) (comA) [Bacillus amyloliquefaciens strain Y14]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=204422 BAMY_RS15200 WP_003152052.1 3052496..3053140(-) (comA) [Bacillus amyloliquefaciens strain Y14]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCATGTGCTGAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGCTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment