Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BAMY_RS12485 Genome accession   NZ_CP017953
Coordinates   2539139..2539906 (-) Length   255 a.a.
NCBI ID   WP_003152982.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Y14     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2534139..2544906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS12465 (BAMY_12195) - 2534341..2535153 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  BAMY_RS12470 (BAMY_12200) ccpN 2535179..2535817 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  BAMY_RS12475 (BAMY_12205) glyS 2535918..2537957 (-) 2040 WP_071543354.1 glycine--tRNA ligase subunit beta -
  BAMY_RS12480 (BAMY_12210) glyQ 2537950..2538837 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  BAMY_RS12485 (BAMY_12215) recO 2539139..2539906 (-) 768 WP_003152982.1 DNA repair protein RecO Machinery gene
  BAMY_RS12490 (BAMY_12220) - 2539943..2540086 (-) 144 WP_007408286.1 YqzL family protein -
  BAMY_RS12495 (BAMY_12225) era 2540242..2541147 (-) 906 WP_003152978.1 GTPase Era -
  BAMY_RS12500 (BAMY_12230) - 2541128..2541538 (-) 411 WP_003152976.1 cytidine deaminase -
  BAMY_RS12505 (BAMY_12235) - 2541662..2542036 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  BAMY_RS12510 (BAMY_12240) ybeY 2542017..2542490 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  BAMY_RS12515 (BAMY_12245) - 2542491..2544623 (-) 2133 WP_025852966.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29264.86 Da        Isoelectric Point: 8.3099

>NTDB_id=204410 BAMY_RS12485 WP_003152982.1 2539139..2539906(-) (recO) [Bacillus amyloliquefaciens strain Y14]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=204410 BAMY_RS12485 WP_003152982.1 2539139..2539906(-) (recO) [Bacillus amyloliquefaciens strain Y14]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894

Multiple sequence alignment