Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   BAMY_RS11985 Genome accession   NZ_CP017953
Coordinates   2453873..2454673 (-) Length   266 a.a.
NCBI ID   WP_025852860.1    Uniprot ID   A0A6A8LHI7
Organism   Bacillus amyloliquefaciens strain Y14     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2448873..2459673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS11960 (BAMY_11690) - 2449420..2450052 (+) 633 WP_003153189.1 helix-turn-helix domain-containing protein -
  BAMY_RS20270 (BAMY_11695) - 2450343..2450480 (+) 138 WP_162918042.1 hypothetical protein -
  BAMY_RS11965 (BAMY_11700) - 2450574..2451692 (+) 1119 WP_025852854.1 NADH-dependent flavin oxidoreductase -
  BAMY_RS11970 (BAMY_11705) - 2451818..2452030 (+) 213 WP_003153183.1 spore germination protein -
  BAMY_RS11975 (BAMY_11710) - 2452156..2452368 (+) 213 WP_014305392.1 spore germination protein -
  BAMY_RS11980 (BAMY_11715) alr 2452544..2453725 (+) 1182 WP_025852858.1 alanine racemase -
  BAMY_RS11985 (BAMY_11720) spo0A 2453873..2454673 (-) 801 WP_025852860.1 sporulation transcription factor Spo0A Regulator
  BAMY_RS11990 (BAMY_11725) spoIVB 2454954..2456234 (-) 1281 WP_071543353.1 SpoIVB peptidase -
  BAMY_RS11995 (BAMY_11730) recN 2456398..2458128 (-) 1731 WP_025852862.1 DNA repair protein RecN Machinery gene
  BAMY_RS12000 (BAMY_11735) ahrC 2458160..2458609 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  BAMY_RS12005 (BAMY_11740) - 2458706..2459551 (-) 846 WP_003153172.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29658.12 Da        Isoelectric Point: 6.1630

>NTDB_id=204400 BAMY_RS11985 WP_025852860.1 2453873..2454673(-) (spo0A) [Bacillus amyloliquefaciens strain Y14]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRRNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=204400 BAMY_RS11985 WP_025852860.1 2453873..2454673(-) (spo0A) [Bacillus amyloliquefaciens strain Y14]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAGAATCCCGATGTGCTCG
TGTTAGACATTATCATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGTCTGCGTGAATCAGAGCTCGAGAAGCAGCCG
AACGTCATCATGCTGACAGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCATCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGTGTCACACACCGTGCCC
CGTCTGCGCAAAGCAGCATTATCCGCAGCCAGCCGGAGCCGAAGCGGAGAAATCTCGATGCCAGCATTACAAGCATTATC
CATGAGATCGGTGTGCCTGCCCATATCAAAGGCTATCTTTATTTGCGTGAAGCCATTTCCATGGTGTATAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCCATTGAAGTCGCATGGAGCAGGGGAAATATTGATTCCATTTCTTCACTGTTCGGATATACGGTAAGC
ATGACAAAAGCAAAACCAACCAACTCGGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LHI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

94.757

100

0.951

Multiple sequence alignment