Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BAMY_RS07200 Genome accession   NZ_CP017953
Coordinates   1357053..1357337 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Y14     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1352053..1362337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS07180 (BAMY_07020) - 1353300..1354208 (+) 909 WP_025851471.1 ketopantoate reductase family protein -
  BAMY_RS07185 (BAMY_07025) - 1354238..1355470 (-) 1233 WP_025851469.1 aminopeptidase -
  BAMY_RS19995 - 1355571..1355705 (-) 135 WP_003154559.1 protein YkpC -
  BAMY_RS07190 (BAMY_07030) mreBH 1355777..1356784 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  BAMY_RS07200 (BAMY_07040) abrB 1357053..1357337 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BAMY_RS07205 (BAMY_07045) - 1357510..1358814 (+) 1305 WP_014304932.1 ATP-binding protein -
  BAMY_RS07210 (BAMY_07050) - 1358816..1359643 (+) 828 WP_025851463.1 gamma-glutamylcyclotransferase -
  BAMY_RS07215 (BAMY_07055) ktrC 1359684..1360349 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  BAMY_RS07220 (BAMY_07060) ade 1360498..1362231 (+) 1734 WP_025851460.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=204393 BAMY_RS07200 WP_024085249.1 1357053..1357337(+) (abrB) [Bacillus amyloliquefaciens strain Y14]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=204393 BAMY_RS07200 WP_024085249.1 1357053..1357337(+) (abrB) [Bacillus amyloliquefaciens strain Y14]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGTAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment