Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BAMY_RS07090 Genome accession   NZ_CP017953
Coordinates   1336559..1337155 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Y14     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1331559..1342155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAMY_RS07060 (BAMY_06900) - 1331771..1332226 (+) 456 WP_003154599.1 flavodoxin -
  BAMY_RS07065 (BAMY_06905) dapD 1332308..1333018 (+) 711 WP_003154598.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BAMY_RS07070 (BAMY_06910) - 1333089..1334216 (+) 1128 WP_003154597.1 N-acetyldiaminopimelate deacetylase -
  BAMY_RS07075 (BAMY_06915) - 1334277..1334522 (+) 246 WP_003154596.1 YkuS family protein -
  BAMY_RS07080 (BAMY_06920) - 1334556..1335362 (-) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  BAMY_RS07085 (BAMY_06925) - 1335650..1336108 (+) 459 WP_003154593.1 TlpA disulfide reductase family protein -
  BAMY_RS07090 (BAMY_06930) rok 1336559..1337155 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  BAMY_RS07095 (BAMY_06935) - 1337176..1338168 (-) 993 WP_003154589.1 hypothetical protein -
  BAMY_RS07100 (BAMY_06940) - 1338314..1338916 (+) 603 WP_003154587.1 molybdenum cofactor guanylyltransferase -
  BAMY_RS07105 (BAMY_06945) - 1338968..1339987 (+) 1020 WP_003154586.1 molybdopterin-synthase adenylyltransferase MoeB -
  BAMY_RS07110 (BAMY_06950) glp 1340005..1341297 (+) 1293 WP_025851480.1 gephyrin-like molybdotransferase Glp -
  BAMY_RS07115 (BAMY_06955) mobB 1341258..1341779 (+) 522 WP_003154581.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=204392 BAMY_RS07090 WP_003154591.1 1336559..1337155(+) (rok) [Bacillus amyloliquefaciens strain Y14]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=204392 BAMY_RS07090 WP_003154591.1 1336559..1337155(+) (rok) [Bacillus amyloliquefaciens strain Y14]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment