Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   BMU11_RS06780 Genome accession   NZ_CP017938
Coordinates   1418024..1418824 (+) Length   266 a.a.
NCBI ID   WP_199977444.1    Uniprot ID   -
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1413024..1423824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS06755 (BMU11_06565) - 1413940..1415229 (+) 1290 WP_078220125.1 glycosyltransferase family 4 protein -
  BMU11_RS06760 (BMU11_06570) - 1415254..1415805 (+) 552 WP_005066176.1 phosphatase PAP2 family protein -
  BMU11_RS06765 (BMU11_06575) iscX 1415905..1416105 (+) 201 WP_004698764.1 Fe-S cluster assembly protein IscX -
  BMU11_RS06770 (BMU11_06580) ndk 1416219..1416650 (+) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  BMU11_RS06775 (BMU11_06585) rlmN 1416774..1418009 (+) 1236 WP_002115097.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  BMU11_RS06780 (BMU11_06590) pilF 1418024..1418824 (+) 801 WP_199977444.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  BMU11_RS06785 (BMU11_06595) - 1418815..1419606 (+) 792 WP_002114935.1 helix-turn-helix domain-containing protein -
  BMU11_RS06790 (BMU11_06600) ispG 1419628..1420743 (+) 1116 WP_002115078.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  BMU11_RS06795 (BMU11_06605) hisS 1420740..1422032 (+) 1293 WP_017385736.1 histidine--tRNA ligase -
  BMU11_RS06800 (BMU11_06610) - 1422061..1422759 (+) 699 WP_017398816.1 YfgM family protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30086.32 Da        Isoelectric Point: 9.0417

>NTDB_id=204280 BMU11_RS06780 WP_199977444.1 1418024..1418824(+) (pilF) [Acinetobacter pittii strain YMC2010/8/T346]
MSIPKLKTVLCMGIAVAFLASGCQTTHTQKKDPEKAVKVRTQLAAEHIRSGDLDSAKRALDQALSVDSRDATANMMMGIL
LQQEGSKPNLEKAEHYFKRAISSEPDNAQAHNNYGTYLYQMERYNDAVEQFRIAGATLGYDQRYQALENLGRIYLKLGDV
ANAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGVRVARANADKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=204280 BMU11_RS06780 WP_199977444.1 1418024..1418824(+) (pilF) [Acinetobacter pittii strain YMC2010/8/T346]
TTGAGTATTCCAAAGTTAAAAACGGTCTTATGTATGGGGATTGCAGTTGCATTTCTGGCAAGTGGTTGCCAGACAACGCA
TACGCAAAAAAAAGACCCAGAGAAAGCGGTAAAGGTGCGTACACAACTTGCTGCTGAACATATCCGTTCGGGTGACTTGG
ACTCAGCAAAGCGAGCTCTTGATCAAGCTTTAAGTGTAGATAGCCGCGATGCTACTGCAAATATGATGATGGGTATTTTG
CTACAGCAAGAAGGTAGCAAACCCAATTTAGAAAAAGCTGAACATTATTTTAAAAGAGCAATTTCATCTGAACCGGATAA
TGCTCAAGCACATAATAATTATGGTACTTATTTATATCAAATGGAGCGTTATAATGATGCGGTTGAGCAATTTCGTATTG
CTGGCGCAACATTAGGTTATGACCAACGCTATCAGGCATTAGAAAATCTGGGGCGTATTTATTTAAAATTGGGTGATGTT
GCGAATGCTGAAAAAACATTCAAACAAGCACTCCTTGCTAACCGCGACTCTTATATTTCAATGTTAGAGTTAGCGGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAGCAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCAAGAGCACTTTGGATTGGTGTAAGAGTGGCTCGAGCCAATGCGGATAAAATGGGAATGCAAGTGTTAGTAAACCAG
TTACGTGCTTTGTTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(89-134)

Tetratricopeptide repeat (TPR_16)

(149-206)

Tetratricopeptide repeat (TPR_8)

(39-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

94.361

100

0.944
  pilF Acinetobacter baylyi ADP1

76.154

97.744

0.744

Multiple sequence alignment