Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   BMU11_RS06100 Genome accession   NZ_CP017938
Coordinates   1275450..1277678 (-) Length   742 a.a.
NCBI ID   WP_078220083.1    Uniprot ID   -
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1270450..1282678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS06080 (BMU11_05905) cbpA 1270638..1271594 (-) 957 WP_078220080.1 DnaJ C-terminal domain-containing protein -
  BMU11_RS06085 (BMU11_05910) - 1271741..1272352 (-) 612 WP_005079293.1 LysE family translocator -
  BMU11_RS06090 (BMU11_05915) hslO 1272490..1273365 (-) 876 WP_078220081.1 Hsp33 family molecular chaperone HslO -
  BMU11_RS06095 (BMU11_05920) kefB 1273529..1275373 (-) 1845 WP_078220082.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  BMU11_RS06100 (BMU11_05925) priA 1275450..1277678 (-) 2229 WP_078220083.1 primosomal protein N' Machinery gene
  BMU11_RS06105 (BMU11_05930) gspF 1277827..1279032 (+) 1206 WP_005065941.1 type II secretion system inner membrane protein GspF -
  BMU11_RS06110 (BMU11_05935) gspG 1279056..1279571 (+) 516 WP_019768050.1 type II secretion system major pseudopilin GspG -
  BMU11_RS06115 (BMU11_05940) - 1279838..1280182 (+) 345 WP_017398750.1 hypothetical protein -
  BMU11_RS06120 (BMU11_05945) csaA 1280327..1280665 (+) 339 WP_005804172.1 tRNA-binding protein -
  BMU11_RS06125 (BMU11_05950) lnt 1280667..1282226 (-) 1560 WP_078220084.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 84105.85 Da        Isoelectric Point: 8.5648

>NTDB_id=204276 BMU11_RS06100 WP_078220083.1 1275450..1277678(-) (priA) [Acinetobacter pittii strain YMC2010/8/T346]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTQAQYERAHVGSRVAISFGRQNLIGIITEKVDPNETFTGTFQLKAISDLL
DEQPILDEQVLSLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKITPCDNVEALLKRSVKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPSPVQLAQMPLTQNEDQKKATQHIVNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQNCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKHTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTI
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDHDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLHFLNEAAEQLRQIAGEIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWSQ
LVHAPRQHQLRLSIDVDPQEFN

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=204276 BMU11_RS06100 WP_078220083.1 1275450..1277678(-) (priA) [Acinetobacter pittii strain YMC2010/8/T346]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTAGCCGTACCTGTACATCTGTACGACACTTTTGA
CTATACACTCACCCAAGCACAATATGAACGGGCTCACGTAGGCTCACGCGTTGCTATTTCATTTGGACGACAAAATCTGA
TTGGCATCATTACTGAAAAAGTTGACCCAAATGAAACATTTACAGGCACCTTTCAGCTTAAAGCCATTTCTGACCTTTTA
GACGAACAGCCTATTTTAGATGAACAAGTTTTAAGTTTATTGACATGGTCGGCTCAGTATTACCAATTTCCAATTGGCGA
GGTCATGCAAACCGCCCTACCCGCATTATTGCGTCAGGGCAAACCAATGGATGTTTTGTTCCATCTTTGGAAAATTACAC
CATGTGATAATGTTGAAGCACTTCTTAAACGTTCTGTTAAGCAACAAGACGCATATCAAATTTTAAAGTTACACCCTGCC
GGAACTACAGAGAATATTCTTAATTTAAGTGGTGTAGAAACGGCTACGCTTAAAGCACTTCAAAAGAAAGGACTGGTTGA
CTGTACGCTTGAACCACACGATTTTAGCCCATCGCCCGTTCAATTGGCACAAATGCCGCTCACGCAAAATGAAGATCAAA
AGAAAGCAACTCAGCACATCGTAAACGCACAGCATCAATACCAAGCTTTTTTGTTAGATGGTTTAACAGGAAGTGGTAAA
ACTGAAGTTTATCTGCACATCATGCACGAAGTGCTCAAGCAAGGTAAGCAAGTACTGGTGTTAGTCCCAGAAATTGGTCT
AACCCCTCAAACGATTTCTCGTTTTAAGTCTCGTTTTAACTGTGATATTGCTCTATTACACTCGGGCTTAAATGACTCCA
AACGCTTGCAGGCATGGCAACAGGCCCAGACTGGCAAAGCATCTATTATTTTAGGGACACGCTCTGCCATCTATACGCCA
CTGCCACGTTTGGGCTTAATCATTTTAGATGAAGAACATGACCTCTCTTATAAACAGCAAGAAGGCTTCCGCTACCATGC
ACGTGATGTCGCTCTTTATCGAGGCCACTTACAAAACTGTCCTGTTATTTTAGGTTCAGCAACACCGAGCATCGATAGTT
ATTATTTGGTCGAAACTGGCAAATTAACCTCACTGCAACTTAACCAACGTGCAGGCCATGCGCTTTTGCCTAAAATGCAT
TTGATTGATCTTAAAATTGTCAAAAAGCAGCATGGAATTAGCCAGCCCCTTATTGAACAAATCAAACATACATTAGCTAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGTCGTGGCTATGCACCTGTACTGGTTTGTGAAAGCTGTGGATGGCAAGCAA
ATTGCCCGCATTGCGACGCGCATTTTACGTTGCACACTCAGCCTTATTCTTATTTACATTGCCATCACTGCGGAACCATT
CATCGCTTACCCGATCATTGCCCTGAATGTCAGCAAAAAAGCTTAAAAACTTTAGGTGCAGGAACCGCTAAGGTTGAAGA
GCACTTACAAGAACTATTTCCAGATCATGATGTCATTCGGGTCGATCGTGACAGTACCAGTCGTGTCGGAAGCTGGCAAA
AAATCTATGACCGTATTCATCAAAACAAACCAACAATTTTGCTTGGCACTCAAATGCTGGCAAAAGGTCATCATTTCCCA
CACGTGACTTTGGTTGCCATTTTAGATATTGATGCGGGGTTACTTAGTGTCGACATTCGCGCGCCAGAACGTACTGCGCA
GTTAATTGTACAAGTCGCTGGACGTGCAGGCCGTGGTGAACATAAAGGCCATGTTTATTTACAAACCCTAAGACCAGATC
ACCCTTTACTAACTACACTCATCGAAAAAGATTATCGGGCGGTTGCTAAACAGACTCTTGCGGAACGTAAAGTCGCATTG
CTGCCACCTTATCGTTATGCAGTACTGATACGTGCAGAATCTAAAGATCGTGACTATACCTTACATTTTTTAAATGAAGC
GGCGGAACAATTACGCCAAATTGCAGGTGAAATTGTTGATATTTGGGGTCCGATTCCAGCCCCTATGGAGCGTAAAGCTG
GGCGCTACCGCGCCCACATGGTGATTTTATCTGCTGACCGTGCTCGCCTACACTTTTACTTAAGGCAATGGTGGTCACAA
TTGGTTCATGCACCACGGCAGCATCAACTTCGGCTATCAATTGATGTTGATCCGCAAGAATTTAATTAG

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(212-370)

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.709

100

0.977

Multiple sequence alignment