Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   BMU11_RS05595 Genome accession   NZ_CP017938
Coordinates   1165223..1165549 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1160223..1170549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS05570 (BMU11_05400) hemC 1160838..1161755 (+) 918 WP_213033996.1 hydroxymethylbilane synthase -
  BMU11_RS05575 (BMU11_05405) hemD 1161759..1162526 (+) 768 WP_078220051.1 uroporphyrinogen-III synthase -
  BMU11_RS05580 (BMU11_05410) - 1162535..1163377 (+) 843 WP_078220052.1 hypothetical protein -
  BMU11_RS05585 (BMU11_05415) - 1163387..1164580 (+) 1194 WP_213033997.1 heme biosynthesis protein HemY -
  BMU11_RS05590 (BMU11_05420) - 1164588..1165028 (+) 441 WP_002121251.1 acyl-CoA thioesterase -
  BMU11_RS05595 (BMU11_05425) hns 1165223..1165549 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  BMU11_RS05600 (BMU11_05430) gspN 1165884..1166627 (+) 744 WP_078220053.1 type II secretion system protein N -
  BMU11_RS05605 (BMU11_05435) - 1166627..1167463 (+) 837 WP_078220054.1 type II secretion system protein N -
  BMU11_RS05610 (BMU11_05440) gspD 1167505..1169775 (+) 2271 WP_078220055.1 type II secretion system secretin GspD -
  BMU11_RS05615 (BMU11_05445) - 1169817..1170443 (+) 627 WP_005065779.1 FHA domain-containing protein -

Sequence


Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=204272 BMU11_RS05595 WP_000801427.1 1165223..1165549(+) (hns) [Acinetobacter pittii strain YMC2010/8/T346]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=204272 BMU11_RS05595 WP_000801427.1 1165223..1165549(+) (hns) [Acinetobacter pittii strain YMC2010/8/T346]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTTGAAGATTTCTT
AATCTAA

Domains


Predicted by InterproScan.

(12-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1


Multiple sequence alignment