Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   BMU11_RS02425 Genome accession   NZ_CP017938
Coordinates   510234..511043 (-) Length   269 a.a.
NCBI ID   WP_213033974.1    Uniprot ID   -
Organism   Acinetobacter pittii strain YMC2010/8/T346     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 505234..516043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMU11_RS02410 (BMU11_02330) pilE 505453..505878 (-) 426 WP_014207809.1 type IV pilin protein Machinery gene
  BMU11_RS02415 (BMU11_02335) pilY2 505875..506357 (-) 483 WP_078219779.1 type IV pilin protein Machinery gene
  BMU11_RS02420 (BMU11_02340) pilY1 506368..510222 (-) 3855 WP_213033973.1 PilC/PilY family type IV pilus protein Machinery gene
  BMU11_RS02425 (BMU11_02345) pilX 510234..511043 (-) 810 WP_213033974.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  BMU11_RS02430 (BMU11_02350) pilW 511040..512041 (-) 1002 WP_078219780.1 PilW family protein Machinery gene
  BMU11_RS02435 (BMU11_02355) pilV 512041..512601 (-) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  BMU11_RS02440 (BMU11_02360) fimU 512595..513068 (-) 474 WP_005067119.1 pilus assembly FimT family protein Machinery gene
  BMU11_RS02445 (BMU11_02365) ispH 513238..514188 (-) 951 WP_032036628.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  BMU11_RS02450 (BMU11_02370) gmk 514311..514940 (+) 630 WP_002116973.1 guanylate kinase -
  BMU11_RS02455 (BMU11_02375) rpoZ 515013..515291 (+) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  BMU11_RS19560 - 515330..515485 (+) 156 Protein_459 hypothetical protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28613.45 Da        Isoelectric Point: 7.6951

>NTDB_id=204255 BMU11_RS02425 WP_213033974.1 510234..511043(-) (pilX) [Acinetobacter pittii strain YMC2010/8/T346]
MTHLIYKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTRDYGSNRQAVVTQVAVSVPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=204255 BMU11_RS02425 WP_213033974.1 510234..511043(-) (pilX) [Acinetobacter pittii strain YMC2010/8/T346]
ATGACCCATTTAATTTATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGCGCTAATAATGCAGTCGTTGAAGATGGCGGCGTGGCGG
GTTTCTGCGATTTAACAAGGGACTATGGTAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAGCGATATTCCAGGCTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTTCGGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

90.441

100

0.914

Multiple sequence alignment