Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AGF18_RS02520 Genome accession   NZ_CP017928
Coordinates   554408..555031 (+) Length   207 a.a.
NCBI ID   WP_004100775.1    Uniprot ID   A0AAD3YQU3
Organism   Klebsiella oxytoca strain CAV1015     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 549408..560031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AGF18_RS02500 (AGF18_02500) - 549507..551264 (-) 1758 WP_017146190.1 AAA family ATPase -
  AGF18_RS02505 (AGF18_02505) matP 551450..551902 (+) 453 WP_004100768.1 macrodomain Ter protein MatP -
  AGF18_RS02510 (AGF18_02510) ompA 552013..553083 (-) 1071 WP_004100770.1 porin OmpA -
  AGF18_RS02515 (AGF18_02515) sulA 553437..553946 (-) 510 WP_024273980.1 SOS-induced cell division inhibitor SulA -
  AGF18_RS02520 (AGF18_02520) sxy/tfoX 554408..555031 (+) 624 WP_004100775.1 TfoX/Sxy family DNA transformation protein Regulator
  AGF18_RS02525 (AGF18_02525) yccS 555019..557154 (-) 2136 WP_004100780.1 YccS family putative transporter -
  AGF18_RS02530 (AGF18_02530) - 557172..557618 (-) 447 WP_004100782.1 YccF domain-containing protein -
  AGF18_RS02535 (AGF18_02535) helD 557741..559795 (+) 2055 WP_016808043.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23688.71 Da        Isoelectric Point: 10.2095

>NTDB_id=204199 AGF18_RS02520 WP_004100775.1 554408..555031(+) (sxy/tfoX) [Klebsiella oxytoca strain CAV1015]
MKKLVCLRIHQFRACLSPLGKISCRPLFGGYSLAIDNTVFAMMAEGEIYLRVCEQSAQYRVAHKNPLLKMQKNGRLVALK
YYHIDEGLWRDSKMLFHLSALSLQTARNEKHRQRHSGRLKNLPNISFHMELQLINSGIKDELTLRKIGAKEAWLRLRKMN
KALTVNVLYSLEGAIAGVHAATLPTQQRQELEEWAAVQVQEMEAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=204199 AGF18_RS02520 WP_004100775.1 554408..555031(+) (sxy/tfoX) [Klebsiella oxytoca strain CAV1015]
ATGAAGAAACTCGTATGTCTTAGGATCCATCAGTTTCGGGCATGTTTGTCTCCATTAGGAAAAATAAGCTGTCGGCCCTT
ATTTGGTGGCTATAGCCTGGCGATAGATAATACCGTGTTTGCCATGATGGCTGAGGGGGAGATCTATCTTCGGGTTTGTG
AGCAGAGTGCGCAGTATCGCGTGGCGCATAAAAACCCGCTGTTGAAGATGCAGAAGAATGGCCGTCTGGTTGCGCTTAAG
TACTATCATATAGATGAAGGGCTTTGGCGTGACAGCAAAATGCTTTTTCATTTATCAGCGCTATCATTACAGACCGCTCG
TAATGAAAAACATCGGCAGCGACATTCCGGAAGATTAAAGAATCTTCCAAATATTAGTTTTCACATGGAGCTCCAGTTGA
TTAATTCAGGTATCAAAGATGAATTAACGCTGCGAAAAATTGGCGCTAAAGAAGCCTGGCTCAGACTACGAAAAATGAAT
AAAGCGCTAACGGTAAACGTCCTTTATTCATTAGAGGGAGCTATTGCGGGCGTGCATGCGGCCACGCTCCCGACGCAACA
GCGTCAGGAGCTTGAGGAGTGGGCGGCGGTACAGGTACAGGAGATGGAGGCCTACTCAGGTTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(15-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.308

94.203

0.493

Multiple sequence alignment