Detailed information NTG0204116

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K09K1_RS19735
• Genome accession: NZ_CP017919
• Coordinates: 2296621..2297607 (+)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain K09K1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2291621..2302607

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K09K1_RS19700 (K09K1_38960)	ftsB	2291631..2291912 (+)	282	WP_005380907.1	cell division protein FtsB	-
K09K1_RS19705 (K09K1_38970)	ispD	2291914..2292621 (+)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K09K1_RS19710 (K09K1_38980)	ispF	2292636..2293112 (+)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K09K1_RS19715 (K09K1_38990)	truD	2293158..2294201 (+)	1044	WP_054730361.1	tRNA pseudouridine(13) synthase TruD	-
K09K1_RS19720 (K09K1_39000)	surE	2294201..2294977 (+)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
K09K1_RS19725 (K09K1_39010)	-	2294977..2295603 (+)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K09K1_RS19730 (K09K1_39020)	-	2295617..2296540 (+)	924	WP_054730358.1	peptidoglycan DD-metalloendopeptidase family protein	-
K09K1_RS19735 (K09K1_39030)	rpoS	2296621..2297607 (+)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
K09K1_RS19740 (K09K1_39040)	mutS	2297690..2300251 (-)	2562	WP_086047036.1	DNA mismatch repair protein MutS	-
K09K1_RS19745 (K09K1_39050)	pncC	2300336..2300818 (+)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
K09K1_RS19750 (K09K1_39060)	recA	2301019..2302062 (+)	1044	WP_005380874.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=204116 K09K1_RS19735 WP_005380887.1 2296621..2297607(+) (rpoS) [Vibrio alginolyticus strain K09K1]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=204116 K09K1_RS19735 WP_005380887.1 2296621..2297607(+) (rpoS) [Vibrio alginolyticus strain K09K1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAGGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854