Detailed information NTG0020408

Bioinformatically predicted

Overview

• Name: comEC/comE3
• Type: Machinery gene
• Locus tag: NCTC11637_01585
• Genome accession: LS483488
• Coordinates: 1600757..1602070 (-)
• Length: 437 a.a.
• NCBI ID: SQJ11001.1
• Uniprot ID: -
• Organism: Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1595757..1607070

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NCTC11637_01579	nadC	1596220..1597041 (-)	822	SQJ10992.1	nicotinate-nucleotide pyrophosphorylase	-
NCTC11637_01580	nadA	1597041..1598051 (-)	1011	SQJ10993.1	quinolinate synthetase	-
NCTC11637_01581	psd	1598041..1598844 (-)	804	SQJ10995.1	phosphatidylserine decarboxylase	-
NCTC11637_01582	-	1598838..1599344 (-)	507	SQJ10997.1	putative inner membrane protein	-
NCTC11637_01583	-	1599357..1599851 (-)	495	SQJ10998.1	Uncharacterised protein	-
NCTC11637_01584	ubiA	1599844..1600728 (-)	885	SQJ10999.1	prenyltransferase	-
NCTC11637_01585	comEC/comE3	1600757..1602070 (-)	1314	SQJ11001.1	Competence protein	Machinery gene
NCTC11637_01586	dnaB	1602067..1603533 (-)	1467	SQJ11170.1	replicative DNA helicase	-
NCTC11637_01587	nnr	1603544..1604944 (-)	1401	SQJ11173.1	YjeF family protein	-
NCTC11637_01588	senX3	1604947..1606080 (-)	1134	SQJ11178.1	histidine kinase sensor protein	-
NCTC11637_01589	arlR	1606115..1606756 (-)	642	SQJ11182.1	two-component regulator	-

Sequence

Protein

• Length: 437 a.a.
• Molecular weight: 50372.33 Da
• Isoelectric Point: 9.9128

>NTDB_id=20408 NCTC11637_01585 SQJ11001.1 1600757..1602070(-) (comEC/comE3) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
MKDKTFQGAFELLTTPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTIIKEPLKNLQYRHAQFFGKFKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSTHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFLRRSFQAISLS
ALVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNILGMPLTIPTISIPSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide

• Length: 1314 bp

>NTDB_id=20408 NCTC11637_01585 SQJ11001.1 1600757..1602070(-) (comEC/comE3) [Helicobacter pylori NCTC 11637 = CCUG 17874 = ATCC 43504 = JCM 12093 strain NCTC 11637]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCGATTAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTATTACAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCATTATTAAAGAGCCTTTAAAGAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGTTCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACGCGAAAACAGGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCACTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTACTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTTAAGGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTATCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATAATA
TTCTAGGCATGCCTTTAACCATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAGGTTTATTTGAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

• Competence protein (Competence) (159-371)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEC/comE3	Helicobacter pylori 26695	96.11	100	0.961