Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   K08M4_RS06505 Genome accession   NZ_CP017916
Coordinates   1403030..1404454 (-) Length   474 a.a.
NCBI ID   WP_086049267.1    Uniprot ID   A0AA34XN73
Organism   Vibrio syngnathi strain K08M4     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1398030..1409454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS06480 (K08M4_12970) - 1398654..1399307 (+) 654 WP_086049262.1 thiopurine S-methyltransferase -
  K08M4_RS06485 (K08M4_12980) purT 1399438..1400613 (-) 1176 WP_086049263.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  K08M4_RS06490 (K08M4_12990) cdd 1400780..1401667 (-) 888 WP_086049264.1 cytidine deaminase -
  K08M4_RS06495 (K08M4_13000) - 1401953..1402630 (-) 678 WP_086049265.1 LrgB family protein -
  K08M4_RS06500 (K08M4_13010) - 1402633..1403004 (-) 372 WP_086049266.1 CidA/LrgA family protein -
  K08M4_RS06505 (K08M4_13020) sbcB 1403030..1404454 (-) 1425 WP_086049267.1 exodeoxyribonuclease I Machinery gene
  K08M4_RS06510 (K08M4_13030) - 1404661..1405509 (-) 849 WP_086049268.1 sterol desaturase family protein -
  K08M4_RS06515 (K08M4_13040) - 1405597..1406610 (-) 1014 WP_086049269.1 DUF2804 domain-containing protein -
  K08M4_RS06520 (K08M4_13050) - 1406836..1407879 (+) 1044 WP_086049270.1 AraC family transcriptional regulator -
  K08M4_RS06525 (K08M4_13060) - 1408071..1408592 (+) 522 WP_012604134.1 DUF2058 domain-containing protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54617.87 Da        Isoelectric Point: 4.8224

>NTDB_id=204062 K08M4_RS06505 WP_086049267.1 1403030..1404454(-) (sbcB) [Vibrio syngnathi strain K08M4]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITRITPQKAASQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENEEGYP
SFKLEHLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKMFDYLYNMRHKRKLNDLVDIVNMTPLMHVSGMFGRDCNY
TSWVVPMAWHPTNQNAVIVIDLAKDPSPLLELDADELRERLYTKRSELGEDELPVPIKLVQLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKAAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARNFPWTLDEAEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=204062 K08M4_RS06505 WP_086049267.1 1403030..1404454(-) (sbcB) [Vibrio syngnathi strain K08M4]
ATGAGTTCAGATAATCAGCCAACCTACTTCTTTTTCGATTACGAAACATGGGGCGTGAGCCCAGCGAAAGATCGTCCGAG
TCAATTCGCAGGTGTTCGTACCGACCAAGATTTCAATGTTATCGGAGAGCCTTTGGTTATCTACTGCCAACCTCCTGCTG
ATTACCTCCCTGCGCCTGAAGCGGCACTGATCACCCGTATCACACCACAAAAAGCAGCTTCTCAAGGTCTTCCTGAGCCA
GAATTTATCGCTAAGATCCATGCTGAGTTAGCTAAACCAAACACCACAAGCCTTGGCTACAACAGTATTCGATTCGATGA
CGAAGTAACGCGTTACACCTGCTACCGAAATTTCATCGACCCATATGCGTGGAGCTGGCAGAACGGTAACTCTCGTTGGG
ATCTACTCGATGTAATGCGCGCTGTTCACGCACTGCGCCCTGAAGGCATTGTTTGGCCAGAGAACGAAGAAGGTTATCCA
AGCTTCAAACTGGAACACCTATCTGTGGCAAACGGCATCGAACATGAGAACGCGCACGATGCGATGGCCGATGTTATTGC
GACCATCGAGTTAGCGAAGAAGCTGAAAGCAGCACAACCTAAGATGTTCGATTACCTTTACAATATGCGTCATAAGCGCA
AGCTGAATGACCTGGTTGATATTGTAAACATGACGCCATTAATGCACGTTTCGGGCATGTTTGGCCGTGACTGCAACTAT
ACAAGCTGGGTAGTGCCTATGGCTTGGCACCCAACCAATCAAAATGCGGTTATCGTGATTGATTTAGCCAAAGATCCAAG
CCCACTGTTAGAACTGGACGCTGATGAACTCAGAGAAAGGCTTTACACCAAACGCAGTGAACTGGGTGAAGACGAGCTCC
CCGTGCCAATCAAATTGGTCCAACTGAACAAGTGCCCTATCCTTGCTCCAGCCAAAACGCTGACGGCTGAAAACGCCGAA
ACCATCGGTATCGATCGCCAACAATGCTTGAAGAACTTGGCACTGCTGCGCGAACACCCAGAGATCCGCGAAAAACTGAT
CGGCCTGTACTCACAAGAACGAGAGTACGAGAAGAGTGATGATGTTGATACACACCTTTACGACGGTTTCTTTTCACCTG
CTGATAAAGCAGCGATGAACATCATTCGCGAAACTGACCCGAACAACTTGGCCGCTTTAGATATCACCTTCAGCGACGAA
CGTATTAAACCGTTACTGTTCCGTTACCGTGCGCGCAACTTCCCATGGACACTCGACGAAGCTGAACAGTTGAAATGGGC
GAACCATTGTCGAGAGTTTTATGAGAGCCGTTTAGAAGAGTACATGCTCAATCTTGAAAACCTCGCGCACGAACATGAAA
GCGACGAGAAGAAAATGGCTATCTTGAAGGCGGTTTATCAATACGTAGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

76.321

99.789

0.762

Multiple sequence alignment