Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   K08M4_RS06445 Genome accession   NZ_CP017916
Coordinates   1390583..1391764 (-) Length   393 a.a.
NCBI ID   WP_086049257.1    Uniprot ID   A0AA34TNB9
Organism   Vibrio syngnathi strain K08M4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1385583..1396764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS06430 (K08M4_12870) - 1386104..1387006 (+) 903 WP_086049254.1 Vmh family MBL fold metallo-hydrolase -
  K08M4_RS06435 (K08M4_12880) - 1387286..1388101 (+) 816 WP_086049255.1 TauD/TfdA family dioxygenase -
  K08M4_RS06440 (K08M4_12890) - 1388374..1390422 (+) 2049 WP_086049256.1 hybrid sensor histidine kinase/response regulator -
  K08M4_RS06445 (K08M4_12900) cqsA 1390583..1391764 (-) 1182 WP_086049257.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  K08M4_RS06450 (K08M4_12910) - 1392061..1393443 (-) 1383 WP_086049258.1 PLP-dependent aminotransferase family protein -
  K08M4_RS06455 (K08M4_12920) - 1393547..1394443 (+) 897 WP_086049259.1 EamA family transporter -
  K08M4_RS06460 (K08M4_12930) - 1394637..1395638 (-) 1002 WP_086049260.1 GTP-binding protein -
  K08M4_RS06465 (K08M4_12940) - 1395628..1396188 (-) 561 WP_086049261.1 carbonate dehydratase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43773.81 Da        Isoelectric Point: 6.1880

>NTDB_id=204061 K08M4_RS06445 WP_086049257.1 1390583..1391764(-) (cqsA) [Vibrio syngnathi strain K08M4]
MSDTTKNKPLPSFIEERLNFYIQDLITQNQSQKHLVLGKRPQRNAVVMQSNDYLALSHNKPIQEAHQAAIIEHDDNVVMS
AIFLQDEESKPAFETELANYVGMESCLLSQSGWAANIGLLQTICPPSTPVYIDFFAHMSLWEGIRAAGGIAHPFMHNNMH
HLRKQLERHGTGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCAVVVDESHSLGTHGENGAGLVHALGLTNQVDFITVSLAK
TFAYRAGAILGPKLLSETLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKGAEDKRQALFNRSKSLTTGLKRIGFNIRSESQ
IVALECGSERNTERVRDFLEQRDVFGAVFCRPATGRNKNIIRFSVNADMTPSDIDHVLTVCHEAYNHPELEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=204061 K08M4_RS06445 WP_086049257.1 1390583..1391764(-) (cqsA) [Vibrio syngnathi strain K08M4]
ATGAGTGATACAACAAAAAACAAACCACTACCTTCCTTTATCGAAGAACGCTTGAACTTCTATATTCAAGACCTCATTAC
CCAGAACCAAAGCCAAAAGCACTTGGTGTTGGGTAAACGACCTCAGCGCAACGCCGTTGTAATGCAGAGCAATGATTACT
TAGCACTGTCACACAACAAACCGATCCAAGAGGCTCATCAAGCGGCGATCATCGAACACGATGACAACGTAGTGATGTCT
GCTATTTTCTTACAAGATGAAGAGTCTAAACCTGCATTTGAAACCGAACTCGCGAACTATGTCGGAATGGAAAGCTGTTT
ACTTTCTCAGTCGGGTTGGGCGGCTAATATTGGGTTACTTCAAACGATCTGCCCTCCGAGCACACCTGTGTATATCGACT
TTTTTGCCCACATGTCGCTATGGGAAGGCATTCGTGCCGCTGGCGGCATTGCCCACCCGTTTATGCATAACAATATGCAT
CACCTGCGCAAACAGCTAGAGCGCCACGGCACAGGCGTTATTGTGGTCGATTCAGTTTACAGCACCATTGGGACCATCGC
CCCACTACGCGACATCTACGAAATGGCGCAGGAGTTTGATTGTGCCGTTGTCGTTGATGAATCGCATTCATTGGGCACGC
ATGGGGAGAATGGTGCTGGCTTAGTTCACGCATTGGGTCTCACTAACCAAGTCGACTTCATTACCGTTAGTTTGGCTAAA
ACCTTTGCTTATCGTGCAGGCGCGATCCTTGGGCCAAAACTGCTTTCAGAAACCTTACCGTTTGTTGCTTATCCCGCGAT
TTTCAGTTCGACGGTATTACCACAAGAAGTGGTTCGTTTAGAGAAAACATTAGAGGTAATAAAAGGTGCAGAAGACAAAC
GACAAGCCTTATTCAATCGCTCTAAATCACTTACTACCGGCCTCAAACGAATAGGCTTTAATATCCGCAGCGAGTCTCAA
ATTGTGGCATTAGAGTGCGGCAGTGAAAGAAACACCGAGCGTGTTCGCGATTTCCTCGAACAGCGTGATGTGTTCGGTGC
TGTTTTTTGTCGCCCCGCTACGGGTAGGAACAAAAACATCATCCGCTTTTCAGTCAATGCCGACATGACACCTAGTGATA
TTGATCATGTTCTCACCGTTTGTCATGAGGCATACAATCATCCGGAGTTAGAGTTCGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.556

98.473

0.547

Multiple sequence alignment