Detailed information    

insolico Bioinformatically predicted

Overview

Name   chiS   Type   Regulator
Locus tag   K08M4_RS03005 Genome accession   NZ_CP017916
Coordinates   614601..617990 (-) Length   1129 a.a.
NCBI ID   WP_086048804.1    Uniprot ID   A0AA34XMN4
Organism   Vibrio syngnathi strain K08M4     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 609601..622990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS02990 (K08M4_05930) - 610025..611050 (-) 1026 WP_004734531.1 ABC transporter permease -
  K08M4_RS02995 (K08M4_05940) - 611053..612039 (-) 987 WP_004734532.1 ABC transporter permease -
  K08M4_RS03000 (K08M4_05950) - 612209..613891 (-) 1683 WP_009847561.1 ABC transporter substrate-binding protein -
  K08M4_RS03005 (K08M4_05960) chiS 614601..617990 (-) 3390 WP_086048804.1 response regulator Regulator
  K08M4_RS03010 (K08M4_05970) rsmC 618208..619230 (-) 1023 WP_086048805.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -
  K08M4_RS03015 (K08M4_05980) - 619341..620426 (-) 1086 WP_086048806.1 AI-2E family transporter -
  K08M4_RS22390 (K08M4_05990) - 620503..620628 (+) 126 WP_009847557.1 hypothetical protein -
  K08M4_RS03020 (K08M4_06000) hemL 620769..622064 (-) 1296 WP_086048807.1 glutamate-1-semialdehyde 2,1-aminomutase -
  K08M4_RS03025 (K08M4_06010) erpA 622361..622702 (+) 342 WP_004734539.1 iron-sulfur cluster insertion protein ErpA -

Sequence

Protein


Download         Length: 1129 a.a.        Molecular weight: 127238.84 Da        Isoelectric Point: 5.3156

>NTDB_id=204056 K08M4_RS03005 WP_086048804.1 614601..617990(-) (chiS) [Vibrio syngnathi strain K08M4]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARANAQQRYIKGSGDQIKTSILPESSSFIGSERYRLLHKRYHNSYLELLKRSDF
DDILLVDINGNIAYSVFKHDDYGTNLLTGKYKNANLGKTFQRLEKDVKDKRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGDDHLPRSLAHSQESINLSLDVVDKALAGETAVGTFDNAQDQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVFVASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMLLIKSQNDELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPANQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDINKSAVDLSAATSLVLELSHHLLGNKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLIQAGQDSS
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQEELDNYSDSGSYSHFQAPDLIDNNQQENSVISEDP
DGPLLVIADDEPVNLRVLDSFLKLEGYRVRTACDGPETIELIEKEKPELLLLDIMMPGMSGYQVCEALRKQYDHAQLPII
MLTALNQAEDRVRGFEAGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICIRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKVEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRVNNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRLADKATGEGKNKQELMREVLVDVMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIETLR
DKLQKLLTS

Nucleotide


Download         Length: 3390 bp        

>NTDB_id=204056 K08M4_RS03005 WP_086048804.1 614601..617990(-) (chiS) [Vibrio syngnathi strain K08M4]
ATGTTTAGATTCTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACTCTAATGCTGGCATTTCTTGTCCTTAGTATTAC
CCCGGTGACACTTATCGCGATATTTTTCCTCCAATCGCACAGTCAGGATCTTCAGGAACAAAGTACTTCACACCTTGTTT
CCGTCCGAGATACTAAACAGCAGCAAATTGTCGATTACCTACAAGCTCAAGAATCTCAAGTGATGGGCTTTGTTCGCTCA
GAGCTTGCCAATGCCAGTGGCGGGCGATTCTATGGTTTGATCAATGCATTTCAACGCCTAGGGCTAGACATTGACGAAGC
ACGCGCTAATGCGCAGCAGCGTTATATAAAAGGATCTGGCGATCAAATCAAAACATCGATTCTCCCTGAATCCAGCAGCT
TTATTGGCAGCGAGCGCTATCGTCTACTTCACAAGCGCTACCACAACTCTTATTTAGAGCTGCTTAAGCGTTCTGATTTT
GACGACATTTTATTGGTCGACATTAACGGTAACATCGCTTATTCAGTTTTTAAGCACGATGACTACGGCACCAACTTACT
GACAGGTAAGTACAAAAATGCAAACCTCGGCAAAACCTTTCAACGCCTAGAAAAGGACGTAAAAGACAAACGTAAATCCA
ACGAAGACTACACGCCAGTTATCGTTTCTGACTTTAAAGACGAAAATGGTAAACAGACCGCATGGTTAGGCGCACCTATC
GTTCAACAGGGCTATCTACACAGTTACGCCATGTTTAGACTACCGATTAACGGTATTACGAAGCTGATCGCCGATCTCAA
CAAGAGCTCGAATATTCAGACCTTGCTTGTCGGCGATGATCATCTGCCGCGTAGCCTTGCCCATTCGCAAGAGTCGATTA
ATTTGAGTTTAGATGTTGTTGATAAAGCCCTTGCGGGAGAAACGGCCGTAGGCACCTTCGACAACGCTCAAGATCAAGCG
ATCATCGCTGCATATACTCCAATTGAACTCAAATATGCGACTTGGGCACTGGTCGTCGAGCTTCCTGAGAAAGAAGCGTT
TGCCCGTATCCATCAGTTAGAAAAGATCTTCGTAATCGTGATGCTGACGGCGATTATTCTTGTATTTGTCGCATCCCATT
ATCTGTCTAACTTCATTACATCACCGTTACTCAAGCTCACATGGGCAGCAGAGAAAGTCTCTGCGGGTGACCTTGATGAA
ACCATGATTAATACCGAACGAAAAGATGAGATAGGCCGTCTCGCGGTAAGCTTCGAAAGAATGCAGCGTTCGATTCGTGA
AAAGATGCTACTCATTAAGAGCCAAAATGATGAGCTTGAGGACAACCTTAAGACCATTCAAAAACAAAATGAAGAGTTGC
AGCTTGCCAATAAACTGAAAGATGAATTCTTGGCGACGACTTCGCATGAACTCAGAACGCCATTACATGGCATGGTAGGT
ATTGCTGAAGCGCTAATATCTGGCGCAAACGGCCCTATTCCTGCCAATCAGAAGTACCAGTTGGATATCATCATCAATAG
TGGCCAGAGATTGGCAACACTGGTCGATGATCTACTTGATTACCACAAAATGCGCTACGGCAGCTTAGACATTAATAAAT
CGGCTGTTGATTTATCTGCTGCTACCAGCTTAGTACTCGAGTTGTCTCATCATCTGTTGGGCAATAAGCCAATTCGAATT
ATTAACCAAGTACCCAGTGATTTAGGGCTAGTTTCGTCCGATCCTCAACGACTCGAACAAGTGATGTATAACTTGGTCGG
CAATGCCATCAAGTACACATCAGAAGGTAAAATTGTTATCTCAGCAAGCGTTATCGACGACAACATTCGCGTACAAGTTG
TTGATACAGGCCAAGGCATACCTGCTGAATACCTAGAACACATCTTTGAACCACTGATTCAAGCCGGGCAAGACTCTAGT
AACTATCGCCAAGGTGCAGGCCTTGGGTTGTCCATAAGTCGTCAGCTGATTGAACTGATGGGCGGTTCACTGTACGTAAG
TAGCCAGCCAATGCTTGGCACGACGTTCAGCTTTACCTTACCTTTAGCCACCCAAGAAGAGTTGGATAACTACAGTGATT
CAGGAAGCTATTCGCACTTCCAAGCGCCAGATTTAATTGATAACAACCAACAAGAAAATAGTGTTATCAGTGAAGACCCA
GACGGTCCGTTACTGGTGATCGCCGATGATGAGCCAGTAAACTTGCGCGTGCTAGACAGTTTCTTGAAATTGGAAGGTTA
TCGAGTGCGCACCGCATGTGACGGCCCAGAAACCATTGAACTGATTGAGAAAGAGAAGCCAGAGTTACTTCTGCTCGATA
TTATGATGCCAGGTATGAGTGGCTATCAGGTGTGTGAAGCACTGCGTAAGCAATACGATCATGCACAGTTGCCAATCATC
ATGCTCACTGCACTAAACCAAGCAGAAGATCGAGTTCGTGGCTTTGAAGCAGGTGCCAATGATTACTTGTCTAAACCGTT
CAACAAACAAGAGCTGGCGGCGCGAATTACGGCTCACTTATCAGCAAGTAAAGCTGAGCAAAGGCGTCTTGAGAATGACC
AATTGCAACTAGAGCTTAAACACAGAGCCATGGTTGAAGCTAACCTGCTAGAAACTCAAGGGCGCTTGCTAGAGCAGCTA
GAATCAGCCCCAGAGGCCATCATCTGTATTCGTGATGATCAACGTATTCGATTTGCCAACGAAGCAGCAGCAAAACTATT
TAGGCGTGGCCAAGAACAGCTTAAACGCTCGATGGCCGATGAGATCATTGCACCTAAATACCTTAAGGTGGAACAAGCTC
ACTATTGTGGTGATATTGACATCTATATAGACGACACTCGTCAGCGCATACCAAGTGACATTCTCAAGCTACCTGAAGGC
TCAGGGCTCGACACTATGTATATCTTTAATGTCGGTGGTGGGGTTAATTCAAACCGAGTCAATAACCTTGAAACGGCAGT
TGAGGCACTTTCAAGCTACGCCTTTGAGGGTGACAAAGATAAACTTCAACAACTGAAAGAGCTTGGCGGTGAATTTACTC
GCCTTGCAGATAAAGCAACCGGTGAAGGTAAAAACAAACAAGAGCTGATGCGTGAAGTACTGGTCGATGTCATGACGAAT
GCCATCATCTACTGGGAGTCTGTTACTGGGGAAACCAAGTTTGCCTTCGCAGAGAAGAGTGGCTTGTGGCGCGTCTACCT
AGACCGCAGTACCCTACAAACTCGAACGCTAGACAAGTACCTACGCGTAGAAACTCTACCGAAAACACCTCGCTGGCGAA
CGGTACTGAGCTCTATCGAGTTTATACTTGAGCACTGTAAAGAACAGACACCTGAAAGAACTCATATTGAGACTCTAAGG
GATAAGCTACAAAAACTACTGACCAGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(726-836)

PAS domain (PAS_8)

(880-914)

His Kinase A (phospho-acceptor) domain (HisKA)

(460-525)

HAMP domain (HAMP)

(375-427)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(574-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chiS Vibrio cholerae strain A1552

75.908

100

0.759

Multiple sequence alignment