Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   K08M4_RS02730 Genome accession   NZ_CP017916
Coordinates   546744..547262 (+) Length   172 a.a.
NCBI ID   WP_086048769.1    Uniprot ID   A0AA34TLY8
Organism   Vibrio syngnathi strain K08M4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 541744..552262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K08M4_RS02720 (K08M4_05390) gshA 544490..546058 (+) 1569 WP_086050376.1 glutamate--cysteine ligase -
  K08M4_RS02725 (K08M4_05400) - 546069..546719 (+) 651 WP_086048768.1 hypothetical protein -
  K08M4_RS02730 (K08M4_05410) luxS 546744..547262 (+) 519 WP_086048769.1 S-ribosylhomocysteine lyase Regulator
  K08M4_RS02735 (K08M4_05420) - 547466..548737 (-) 1272 WP_009847611.1 CNNM domain-containing protein -
  K08M4_RS02740 (K08M4_05430) - 548865..549659 (-) 795 WP_086048770.1 inner membrane protein YpjD -
  K08M4_RS02745 (K08M4_05440) ffh 549860..551254 (+) 1395 WP_004735506.1 signal recognition particle protein -
  K08M4_RS02750 (K08M4_05450) rpsP 551467..551715 (+) 249 WP_004735508.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18900.63 Da        Isoelectric Point: 4.6882

>NTDB_id=204050 K08M4_RS02730 WP_086048769.1 546744..547262(+) (luxS) [Vibrio syngnathi strain K08M4]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRAHLNGSAVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGVSVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=204050 K08M4_RS02730 WP_086048769.1 546744..547262(+) (luxS) [Vibrio syngnathi strain K08M4]
ATGCCTTTATTAGATAGTTTTACTGTTGATCACACGCGCATGAACGCACCTGCAGTTCGTGTTGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATTACGGTATTTGACCTGCGTTTTACTGCGCCAAACAAAGATATCCTATCTGAGAGAGGTATTC
ATACTCTCGAGCACCTATACGCTGGGTTCATGCGTGCTCACCTCAATGGCTCTGCTGTTGAGATCATTGATATTTCGCCT
ATGGGTTGTCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGTTAGCAGC
GATGCAAGACGTACTGAAAGTTGAGAACCAGAATAAGATCCCTGAGTTGAACGAATATCAATGTGGTACCGCAGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATTGCGAATGCAATCATCGCTGCAGGTGTTTCAGTAAACAAAAATGATGAACTGGCA
TTGCCAGAGTCTATGCTTCAAGAGCTTAAAATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89

Multiple sequence alignment