Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   SPG_1891 Genome accession   CP001015
Coordinates   1803693..1804592 (-) Length   299 a.a.
NCBI ID   ACF55493.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1798693..1809592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1886 - 1799023..1799895 (-) 873 ACF55240.1 dimethyladenosine transferase -
  SPG_1887 - 1800026..1800334 (-) 309 ACF55709.1 conserved hypothetical protein -
  SPG_1888 - 1800327..1800968 (-) 642 ACF56467.1 ABC transporter, ATP-binding protein -
  SPG_1889 - 1800970..1803000 (-) 2031 ACF54781.1 bacteriocin-associated integral membrane protein -
  SPG_1890 - 1803077..1803373 (-) 297 ACF55016.1 hypothetical protein -
  SPG_1891 comR 1803693..1804592 (-) 900 ACF55493.1 transcriptional regulator PlcR, putative Regulator
  SPG_1892 - 1804664..1805224 (-) 561 ACF56171.1 primase homolog -
  SPG_1893 - 1805224..1805997 (-) 774 ACF56632.1 hydrolase, TatD family -
  SPG_1894 - 1806293..1806967 (-) 675 ACF55910.1 LPXTG-motif cell wall anchor domain -
  SPG_1895 rpmH 1807230..1807364 (-) 135 ACF56612.1 ribosomal protein L34 -
  SPG_1896 - 1807509..1808723 (-) 1215 ACF54779.1 aminotransferase -
  SPG_1897 - 1808879..1809172 (-) 294 ACF55672.1 conserved hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35351.12 Da        Isoelectric Point: 4.8336

>NTDB_id=20404 SPG_1891 ACF55493.1 1803693..1804592(-) (comR) [Streptococcus pneumoniae G54]
MLIGQKIKEIRIEKGVSRPDFCGDEQELTVRQLSRIESGASQPSLPKLAYIARRLGVPVYSLMPDFSALPPAYLELKYQI
LREPIYGKEEEYDKKEACLEEIYKTYFDNLPKEEQLACEVLQACLDTSRTRRPEYAELILEEHMSQIIEKEVYSTNDMLL
IRLFFYQMLIRKDLAKFINQIEKLMLFLLEQKKVTKLENFFIIRDTLISGMCCLEKVGVTDCFNDYLSCLQEIMDKTQDY
QKKPLVFMFLWKQALREERDFSLAESFYQSSKTFAQLIGDEFLVKKLTEEWQEDVKKYL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=20404 SPG_1891 ACF55493.1 1803693..1804592(-) (comR) [Streptococcus pneumoniae G54]
ATGTTAATTGGTCAAAAAATTAAAGAGATTCGGATAGAAAAAGGAGTTAGTCGTCCAGATTTTTGTGGAGATGAGCAAGA
ACTGACAGTTCGTCAACTGTCGCGAATTGAAAGTGGAGCTTCGCAACCGAGTTTGCCCAAGTTAGCCTATATTGCTCGCC
GGCTAGGAGTTCCAGTTTATAGCCTTATGCCGGATTTTTCAGCTCTTCCTCCTGCTTATTTAGAATTGAAATACCAGATT
TTACGTGAACCAATCTATGGTAAAGAAGAGGAGTACGATAAGAAGGAAGCGTGTTTGGAAGAGATTTATAAAACATACTT
TGATAATCTTCCTAAAGAAGAACAATTAGCATGTGAAGTATTGCAGGCGTGTTTGGATACTTCTAGAACTAGAAGGCCTG
AATATGCAGAGTTAATACTTGAGGAACATATGTCTCAGATCATAGAAAAAGAAGTTTATTCAACAAATGATATGTTGTTG
ATTCGTTTGTTTTTTTATCAAATGCTCATTAGAAAAGATCTTGCCAAATTTATAAATCAAATCGAAAAGCTAATGCTCTT
TCTTTTGGAACAGAAAAAGGTAACTAAATTAGAAAACTTCTTTATAATTAGAGATACTCTTATTTCAGGAATGTGTTGTC
TTGAAAAGGTAGGAGTAACTGATTGTTTTAATGATTATCTATCGTGTTTACAAGAAATTATGGATAAAACTCAAGATTAT
CAAAAGAAACCTCTTGTATTTATGTTTTTGTGGAAGCAAGCATTAAGAGAAGAAAGAGATTTTAGTTTAGCTGAATCATT
TTATCAGTCTTCTAAAACATTTGCGCAGCTAATTGGAGATGAATTTCTAGTAAAGAAATTGACAGAGGAATGGCAAGAGG
ATGTCAAAAAATATTTATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(70-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.755

98.328

0.371
  comR Streptococcus suis P1/7

37.457

97.324

0.365
  comR Streptococcus suis 05ZYH33

37.457

97.324

0.365
  comR Streptococcus pyogenes MGAS8232

36.242

99.666

0.361

Multiple sequence alignment