Detailed information NTG0204037

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: K08M4_RS01145
• Genome accession: NZ_CP017916
• Coordinates: 241336..242340 (-)
• Length: 334 a.a.
• NCBI ID: WP_086048605.1
• Uniprot ID: -
• Organism: Vibrio syngnathi strain K08M4
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 236336..247340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K08M4_RS01115 (K08M4_02170)	zapB	236472..236714 (+)	243	WP_009848877.1	cell division protein ZapB	-
K08M4_RS01120 (K08M4_02180)	rraA	236824..237342 (-)	519	WP_009848878.1	ribonuclease E activity regulator RraA	-
K08M4_RS01125 (K08M4_02190)	-	237416..238333 (-)	918	WP_086048603.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
K08M4_RS01130 (K08M4_02200)	hslU	238489..239829 (-)	1341	WP_009848880.1	HslU--HslV peptidase ATPase subunit	-
K08M4_RS01135 (K08M4_02210)	hslV	239888..240436 (-)	549	WP_004729692.1	ATP-dependent protease subunit HslV	-
K08M4_RS01140 (K08M4_02220)	-	240674..241213 (-)	540	WP_086048604.1	SPOR domain-containing protein	-
K08M4_RS01145 (K08M4_02230)	cytR	241336..242340 (-)	1005	WP_086048605.1	DNA-binding transcriptional regulator CytR	Regulator
K08M4_RS01150 (K08M4_02240)	priA	242581..244782 (-)	2202	WP_086048606.1	primosomal protein N'	-
K08M4_RS01155 (K08M4_02250)	rpmE	245114..245332 (+)	219	WP_009848884.1	50S ribosomal protein L31	-
K08M4_RS01160 (K08M4_02260)	-	245664..246953 (+)	1290	WP_086048607.1	malic enzyme-like NAD(P)-binding protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 36527.06 Da
• Isoelectric Point: 6.4911

>NTDB_id=204037 K08M4_RS01145 WP_086048605.1 241336..242340(-) (cytR) [Vibrio syngnathi strain K08M4]
MATMKDVAQLAGVSTATVSRALMNPEKVSVSTRKRVETAVLEAGYSPNTLARNLRRNESKTIITIVPDICDPYFAEIIRG
IEDAAVENDYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDHPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLAQLGHKRIAQISGPVSATLCKFRQQGYQQALRRAGVSMNPAYSTVGDFTFEAGAQAVRQLLALPEQPTA
IFCHNDAMAIGAIQEAKKLGLRVPQDLSIVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLDVLKGNDVQAGSRLLE
AKLVVRGSTAPPRM

Nucleotide

• Length: 1005 bp

>NTDB_id=204037 K08M4_RS01145 WP_086048605.1 241336..242340(-) (cytR) [Vibrio syngnathi strain K08M4]
ATGGCGACAATGAAGGATGTTGCCCAGCTAGCAGGCGTTTCAACAGCCACGGTATCACGTGCATTGATGAACCCTGAAAA
AGTCTCGGTTTCTACTCGTAAGCGAGTTGAGACAGCAGTACTTGAAGCTGGATACTCACCCAATACATTAGCTAGAAATT
TACGTCGCAACGAATCAAAAACCATCATCACTATTGTTCCTGATATCTGTGACCCTTATTTCGCAGAGATCATTCGTGGT
ATCGAAGATGCCGCAGTAGAAAATGACTACCTCGTTCTACTGGGTGATAGCGGCCAACAGAAGAAGCGTGAGTCTTCATT
TGTTAATTTAGTATTCACTAAACAAGCTGATGGCATGCTACTGCTTGGTACCGACCATCCGTTTGATGTCAGTAAGCCTG
AACAAAAAAACTTACCGCCGATGGTGATGGCATGTGAGTTCGCCCCTGAGCTTGAACTCCCTACCGTACACATCGATAAC
CTGACCTCAGCATTTGAAGCAGTGAACTACCTAGCTCAGTTAGGTCATAAGCGTATAGCACAAATCTCTGGGCCAGTATC
AGCAACGCTTTGTAAGTTCCGCCAACAAGGCTACCAGCAAGCGCTACGTCGTGCAGGAGTATCAATGAATCCAGCCTATA
GCACTGTCGGTGACTTTACCTTTGAAGCGGGCGCTCAAGCAGTTCGTCAATTACTCGCTCTTCCTGAACAACCAACCGCT
ATCTTCTGTCACAATGATGCGATGGCCATTGGTGCGATTCAAGAAGCGAAGAAGTTAGGTTTACGTGTTCCTCAAGACCT
ATCGATTGTTGGCTTCGATGATATCCAATTCGCTCAATACTGCGATCCACCGCTAACGACTATTTCTCAGCCTCGTTATG
AGATTGGACGCCAAGCGATGCTGATGATGCTCGACGTACTGAAAGGCAACGATGTACAAGCAGGGTCACGCCTGCTTGAA
GCTAAATTAGTCGTTCGAGGCAGTACTGCGCCACCTCGAATGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-329)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	89.458	99.401	0.889
cytR	Vibrio parahaemolyticus RIMD 2210633	87.387	99.701	0.871