Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | K08M3_RS04675 | Genome accession | NZ_CP017913 |
| Coordinates | 974217..974501 (+) | Length | 94 a.a. |
| NCBI ID | WP_031777211.1 | Uniprot ID | A0AAW6ZWA9 |
| Organism | Vibrio alginolyticus strain K08M3 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 969217..979501
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K08M3_RS04665 (K08M3_09160) | - | 971628..971900 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| K08M3_RS04670 (K08M3_09170) | ppiD | 972102..973961 (+) | 1860 | WP_053307495.1 | peptidylprolyl isomerase | - |
| K08M3_RS04675 (K08M3_09180) | comEA | 974217..974501 (+) | 285 | WP_031777211.1 | ComEA family DNA-binding protein | Machinery gene |
| K08M3_RS04680 (K08M3_09190) | rrtA | 974600..975151 (-) | 552 | WP_005382331.1 | rhombosortase | - |
| K08M3_RS04685 (K08M3_09200) | - | 975155..975769 (+) | 615 | WP_025766956.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| K08M3_RS04690 (K08M3_09210) | - | 975776..977098 (-) | 1323 | WP_085569942.1 | anti-phage deoxyguanosine triphosphatase | - |
| K08M3_RS04695 (K08M3_09220) | yfbR | 977114..977698 (-) | 585 | WP_086046595.1 | 5'-deoxynucleotidase | - |
| K08M3_RS04700 (K08M3_09230) | - | 977789..979003 (-) | 1215 | WP_005384283.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10336.96 Da Isoelectric Point: 5.1423
>NTDB_id=203994 K08M3_RS04675 WP_031777211.1 974217..974501(+) (comEA) [Vibrio alginolyticus strain K08M3]
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=203994 K08M3_RS04675 WP_031777211.1 974217..974501(+) (comEA) [Vibrio alginolyticus strain K08M3]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATA
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATA
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
88.298 |
100 |
0.883 |
| comEA | Vibrio campbellii strain DS40M4 |
75.789 |
100 |
0.766 |
| comEA | Vibrio cholerae C6706 |
60.87 |
97.872 |
0.596 |
| comEA | Vibrio cholerae strain A1552 |
60.87 |
97.872 |
0.596 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
50.617 |
86.17 |
0.436 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.677 |
65.957 |
0.394 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comEA/celA/cilE | Streptococcus pneumoniae TIGR4 |
38.202 |
94.681 |
0.362 |