Detailed information NTG0203961

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: K10K4_RS13555
• Genome accession: NZ_CP017911
• Coordinates: 2872885..2873871 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain K10K4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2867885..2878871

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K10K4_RS13540 (K10K4_26360)	recA	2868430..2869473 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
K10K4_RS13545 (K10K4_26370)	pncC	2869674..2870156 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
K10K4_RS13550 (K10K4_26380)	mutS	2870241..2872802 (+)	2562	WP_086047036.1	DNA mismatch repair protein MutS	-
K10K4_RS13555 (K10K4_26390)	rpoS	2872885..2873871 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
K10K4_RS13560 (K10K4_26400)	-	2873952..2874875 (-)	924	WP_054730358.1	peptidoglycan DD-metalloendopeptidase family protein	-
K10K4_RS13565 (K10K4_26410)	-	2874889..2875515 (-)	627	WP_005380892.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
K10K4_RS13570 (K10K4_26420)	surE	2875515..2876291 (-)	777	WP_005380894.1	5'/3'-nucleotidase SurE	-
K10K4_RS13575 (K10K4_26430)	truD	2876291..2877334 (-)	1044	WP_054730361.1	tRNA pseudouridine(13) synthase TruD	-
K10K4_RS13580 (K10K4_26440)	ispF	2877380..2877856 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
K10K4_RS13585 (K10K4_26450)	ispD	2877871..2878578 (-)	708	WP_017821625.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
K10K4_RS13590 (K10K4_26460)	ftsB	2878580..2878861 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=203961 K10K4_RS13555 WP_005380887.1 2872885..2873871(-) (rpoS) [Vibrio alginolyticus strain K10K4]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=203961 K10K4_RS13555 WP_005380887.1 2872885..2873871(-) (rpoS) [Vibrio alginolyticus strain K10K4]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGATAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACATGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCATGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAGGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGACGCTTCGGCCTACTAGGCTATGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854