Detailed information
Bioinformatically predicted
Overview
| Name | sbcB | Type | Machinery gene |
| Locus tag | K10K4_RS06400 | Genome accession | NZ_CP017911 |
| Coordinates | 1353893..1355314 (-) | Length | 473 a.a. |
| NCBI ID | WP_086046658.1 | Uniprot ID | - |
| Organism | Vibrio alginolyticus strain K10K4 | ||
| Function | promote homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1353463..1393355 | 1353893..1355314 | within | 0 |
Gene organization within MGE regions
Location: 1353463..1393355
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K10K4_RS06395 (K10K4_12540) | - | 1353463..1353837 (-) | 375 | WP_005397786.1 | CidA/LrgA family protein | - |
| K10K4_RS06400 (K10K4_12550) | sbcB | 1353893..1355314 (-) | 1422 | WP_086046658.1 | exodeoxyribonuclease I | Machinery gene |
| K10K4_RS06405 (K10K4_12560) | - | 1355495..1356712 (+) | 1218 | WP_086046659.1 | tyrosine-type recombinase/integrase | - |
| K10K4_RS06410 (K10K4_12570) | - | 1356835..1357362 (+) | 528 | WP_086046660.1 | hypothetical protein | - |
| K10K4_RS06415 (K10K4_12580) | - | 1357365..1357922 (+) | 558 | WP_086046661.1 | hypothetical protein | - |
| K10K4_RS06420 (K10K4_12590) | - | 1358070..1358825 (+) | 756 | WP_086046662.1 | hypothetical protein | - |
| K10K4_RS06425 (K10K4_12600) | - | 1358899..1359555 (+) | 657 | WP_086046663.1 | TauD/TfdA family dioxygenase | - |
| K10K4_RS06430 (K10K4_12610) | - | 1359566..1360537 (+) | 972 | WP_086046664.1 | hypothetical protein | - |
| K10K4_RS06435 (K10K4_12620) | - | 1360677..1361381 (+) | 705 | WP_086046665.1 | Abi-alpha family protein | - |
| K10K4_RS06440 (K10K4_12630) | - | 1361453..1361758 (-) | 306 | WP_086046666.1 | helix-turn-helix transcriptional regulator | - |
| K10K4_RS25260 (K10K4_12640) | - | 1361799..1361957 (-) | 159 | WP_020333055.1 | hypothetical protein | - |
| K10K4_RS06445 (K10K4_12650) | - | 1362055..1362297 (-) | 243 | WP_086046667.1 | hypothetical protein | - |
| K10K4_RS06450 (K10K4_12660) | - | 1362452..1362724 (-) | 273 | WP_025766807.1 | hypothetical protein | - |
| K10K4_RS06455 (K10K4_12670) | - | 1362924..1364120 (+) | 1197 | WP_157664331.1 | BRCT domain-containing protein | - |
| K10K4_RS06460 (K10K4_12680) | - | 1364135..1364821 (-) | 687 | WP_086046669.1 | LexA family protein | - |
| K10K4_RS06465 (K10K4_12690) | - | 1364927..1365181 (+) | 255 | WP_086046670.1 | hypothetical protein | - |
| K10K4_RS06470 (K10K4_12700) | - | 1365221..1365769 (+) | 549 | WP_053807278.1 | toxin YdaT family protein | - |
| K10K4_RS25780 (K10K4_12710) | - | 1365829..1365960 (+) | 132 | WP_255201246.1 | hypothetical protein | - |
| K10K4_RS25630 (K10K4_12720) | - | 1365957..1366742 (+) | 786 | WP_231970820.1 | hypothetical protein | - |
| K10K4_RS06480 (K10K4_12730) | - | 1366739..1367470 (+) | 732 | WP_086046671.1 | ATP-binding protein | - |
| K10K4_RS06485 (K10K4_12740) | - | 1367471..1368052 (+) | 582 | WP_086046672.1 | hypothetical protein | - |
| K10K4_RS06490 (K10K4_12750) | - | 1368319..1369554 (+) | 1236 | WP_086046673.1 | AAA family ATPase | - |
| K10K4_RS06495 (K10K4_12760) | - | 1369547..1370065 (+) | 519 | WP_050450732.1 | hypothetical protein | - |
| K10K4_RS06500 (K10K4_12770) | - | 1370296..1371060 (+) | 765 | WP_031812313.1 | hypothetical protein | - |
| K10K4_RS06505 (K10K4_12780) | - | 1371220..1371507 (+) | 288 | WP_031812312.1 | hypothetical protein | - |
| K10K4_RS06510 (K10K4_12790) | - | 1371473..1371931 (+) | 459 | WP_086046674.1 | hypothetical protein | - |
| K10K4_RS06515 (K10K4_12800) | - | 1371973..1372158 (+) | 186 | WP_025766795.1 | hypothetical protein | - |
| K10K4_RS06520 (K10K4_12810) | - | 1372486..1373700 (+) | 1215 | WP_086046675.1 | tyrosine-type recombinase/integrase | - |
| K10K4_RS06525 (K10K4_12820) | - | 1374149..1374718 (+) | 570 | WP_025632836.1 | terminase small subunit | - |
| K10K4_RS06530 (K10K4_12830) | - | 1374729..1376663 (+) | 1935 | WP_086046676.1 | terminase gpA endonuclease subunit | - |
| K10K4_RS06535 (K10K4_12840) | - | 1376657..1377184 (+) | 528 | WP_025632833.1 | hypothetical protein | - |
| K10K4_RS06540 (K10K4_12850) | - | 1377184..1378743 (+) | 1560 | WP_086046677.1 | phage portal protein | - |
| K10K4_RS06545 (K10K4_12860) | - | 1378709..1380682 (+) | 1974 | WP_086046678.1 | phage major capsid protein | - |
| K10K4_RS06550 (K10K4_12870) | - | 1380742..1380933 (+) | 192 | WP_025632827.1 | hypothetical protein | - |
| K10K4_RS06555 (K10K4_12880) | - | 1380926..1381204 (+) | 279 | WP_025766788.1 | ATP-binding sugar transporter from pro-phage family protein | - |
| K10K4_RS06560 (K10K4_12890) | - | 1381201..1381833 (+) | 633 | WP_086046679.1 | phage tail protein | - |
| K10K4_RS06565 (K10K4_12900) | gpU | 1381823..1382269 (+) | 447 | WP_025766786.1 | phage tail terminator protein | - |
| K10K4_RS06570 (K10K4_12910) | - | 1382272..1382769 (+) | 498 | WP_086046680.1 | phage tail tube protein | - |
| K10K4_RS06575 (K10K4_12920) | - | 1382772..1383251 (+) | 480 | WP_086046681.1 | phage minor tail protein G | - |
| K10K4_RS06580 (K10K4_12930) | - | 1383275..1383607 (+) | 333 | WP_025632816.1 | phage tail assembly protein T | - |
| K10K4_RS06585 (K10K4_12940) | - | 1383588..1385819 (+) | 2232 | WP_086046682.1 | hypothetical protein | - |
| K10K4_RS06590 (K10K4_12950) | - | 1385826..1386302 (+) | 477 | WP_086046683.1 | hypothetical protein | - |
| K10K4_RS06595 (K10K4_12960) | - | 1386292..1388190 (+) | 1899 | WP_086046684.1 | sialate O-acetylesterase | - |
| K10K4_RS06600 (K10K4_12970) | - | 1388193..1388876 (+) | 684 | WP_025766780.1 | hypothetical protein | - |
| K10K4_RS06605 (K10K4_12980) | - | 1388882..1389418 (+) | 537 | WP_005376972.1 | DUF1833 family protein | - |
| K10K4_RS06610 (K10K4_12990) | - | 1389418..1389843 (+) | 426 | WP_086046685.1 | phage tail protein | - |
| K10K4_RS06615 (K10K4_13000) | - | 1389803..1392616 (+) | 2814 | WP_086046686.1 | host specificity factor TipJ family phage tail protein | - |
| K10K4_RS06620 (K10K4_13010) | - | 1392642..1393355 (-) | 714 | WP_025766776.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 473 a.a. Molecular weight: 54341.54 Da Isoelectric Point: 4.7710
>NTDB_id=203948 K10K4_RS06400 WP_086046658.1 1353893..1355314(-) (sbcB) [Vibrio alginolyticus strain K10K4]
MNNTEQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYCYVESLAS
MNNTEQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQPPADYLPSPEAALITGITPQKTVQEGLSEP
EFIAKIHAELARPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRQKRKLNDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELHERLYTKREDLGELLPVPVKLVHLNKCPILAPAKTLTAENAES
IGIDRQQCLANLALLRQHPEIREKLISLFSVERKFDKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYCYVESLAS
Nucleotide
Download Length: 1422 bp
>NTDB_id=203948 K10K4_RS06400 WP_086046658.1 1353893..1355314(-) (sbcB) [Vibrio alginolyticus strain K10K4]
ATGAATAATACCGAACAGCCTACATTCTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCAGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACTGTTATGTAGAGAGCTTAGCTTCCTAA
ATGAATAATACCGAACAGCCTACATTCTTCTTCTTTGATTATGAGACATGGGGAACCAACCCCGCGAAAGATCGCCCAAG
CCAGTTTGCTGGTGTTCGTACAGATGAAAACTTTAATATCATCGGCGAGCCTTTAGTCATGTACTGTCAACCACCAGCTG
ATTATCTTCCGTCTCCTGAAGCTGCGCTTATTACTGGTATTACTCCGCAAAAAACGGTTCAAGAAGGCCTTTCTGAGCCA
GAGTTTATCGCTAAGATTCACGCTGAACTCGCGAGACCAAATACCACCAGTTTAGGCTACAACAGCATTCGCTTTGATGA
CGAAGTGACCCGTTATACTTGTTATCGCAACTTTATCGATCCATACGCATGGAGTTGGCAAAACGGTAACTCGCGTTGGG
ATTTACTCGATGTACTACGCGCGTGCCATGCCCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAACGAAGATGGCTTCACT
AGCTTTAAATTAGAACACTTGTCTGTGGCTAACGGCATAGAACATAGTAACGCGCACGATGCCATGGCAGATGTGATTGC
GACTATCGAAATGGCAAAGAAAGTAAAAGCAGCGCAACCAAAATTGTTTGATTACTTTTTTTCTATGCGCCAAAAGCGCA
AGCTCAATGATTTAGTCGACATCGTCAACATGACACCGTTGATGCACGTTTCAGGCATGCTAGGGCGCGAATGCCAGTAC
ACTAGCTGGATTGTGCCTGTTGCTTGGCATCCAACCAATAATAACGCCGTTATCACCATCGATTTAGCGAAAGACCCTCA
ACCTATTCTTGAGCTATCCGCAGAAGAGCTGCACGAAAGACTCTACACTAAGCGCGAAGATCTTGGTGAATTGCTACCAG
TGCCAGTTAAACTAGTTCATTTGAACAAATGCCCTATTCTCGCCCCTGCAAAAACGTTAACGGCTGAAAATGCGGAGTCT
ATTGGCATTGATCGCCAGCAATGTCTCGCTAATCTCGCTTTGTTGCGCCAACATCCTGAAATTAGAGAAAAGCTGATTAG
CCTCTTTTCAGTCGAGCGTAAATTCGATAAAAGTGATGACGTCGATACACAGCTTTACGACGGGTTCTTTTCTCCGGCTG
ATCGCGCAGCTATGGATATCATTCGAGAAACCGACCCGAATAATCTTGCTGCATTAGACATTGAATTTGATGACAAGCGC
ATTAAACCTCTATTGTTCCGCTATCGTGCGCGTAACTTCCCAGGCACATTAGACGAGCAAGAACAAAGACGCTGGGCACT
ACACTGTCGAGAAGTGTTTGAAAGCCAAATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCGATATTAAAATCCGTGTACTGTTATGTAGAGAGCTTAGCTTCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sbcB | Vibrio cholerae O1 biovar El Tor strain E7946 |
79.493 |
100 |
0.795 |