Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   K10K4_RS01330 Genome accession   NZ_CP017911
Coordinates   273434..274441 (-) Length   335 a.a.
NCBI ID   WP_005379543.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain K10K4     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 268434..279441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K10K4_RS01305 (K10K4_02530) - 268990..269817 (+) 828 WP_020835168.1 DUF5718 family protein -
  K10K4_RS01310 (K10K4_02540) - 270001..270225 (+) 225 WP_029857381.1 hypothetical protein -
  K10K4_RS01315 (K10K4_02550) hslU 270639..271970 (-) 1332 WP_005397950.1 HslU--HslV peptidase ATPase subunit -
  K10K4_RS01320 (K10K4_02560) hslV 271994..272545 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  K10K4_RS01325 (K10K4_02570) ftsN 272661..273209 (-) 549 WP_017820300.1 cell division protein FtsN -
  K10K4_RS01330 (K10K4_02590) cytR 273434..274441 (-) 1008 WP_005379543.1 DNA-binding transcriptional regulator CytR Regulator
  K10K4_RS01335 (K10K4_02600) priA 274766..276967 (-) 2202 WP_086046495.1 primosomal protein N' -
  K10K4_RS01345 (K10K4_02610) rpmE 277264..277485 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  K10K4_RS01350 (K10K4_02620) rpsJ 277942..278253 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  K10K4_RS01355 (K10K4_02630) rplC 278268..278897 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36892.42 Da        Isoelectric Point: 6.2447

>NTDB_id=203938 K10K4_RS01330 WP_005379543.1 273434..274441(-) (cytR) [Vibrio alginolyticus strain K10K4]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVHSGSRLLE
TNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=203938 K10K4_RS01330 WP_005379543.1 273434..274441(-) (cytR) [Vibrio alginolyticus strain K10K4]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCGAGCATTAATGAACCCAGAAAA
AGTATCTTCTTCAACGAGAAAAAGAGTAGAAGATGCCGTACTTGAAGCGGGTTATTCTCCAAACTCATTAGCGCGTAACT
TACGTAGAAACGAATCAAAAACCATTGTCACTATCGTTCCCGACATCTGTGATCCTTATTTTTCTGAAATTATTCGCGGC
ATTGAAGATGCTGCCATGGAACATGGCTATCTAGTCCTGCTGGGCGATAGCGGACAACAGAAGAAACGCGAAAGTTCTTT
CGTTAACCTCGTATTTACTAAGCAGGCGGATGGAATGCTACTGCTTGGCACAGATCTACCGTTTGATGTCAGTAAGCCAG
AACAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCAGAGTTAGAACTTCCGACAGTACATATTGACAAC
CTGACCTCAGCATTTGAAGCGGTGAATTACCTAACCCAACTAGGTCATAAACGCATTGCTCAAATCTCTGGACCAGATAC
AGCAATATTGTGTCAGTTCCGCCAGCAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCATCAATAAAGATCCACAATATA
GTGTCATTACTGAGTTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAATTGCCTGAGCCACCAACGGCC
ATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGGCTTACGAGTACCGCAAGATCT
CTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCGCCGTTGACCACTATCTCTCAGCCTCGCTATG
AGATTGGTCGACAAGCGATGCTAATGATGCTTGAGATGTTAAAAGGCCACGACGTGCATTCAGGCTCGCGTTTGCTTGAA
ACTAATCTCGTCATTCGCGGAAGTGCTGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

98.204

99.701

0.979
  cytR Vibrio cholerae C6706

89.521

99.701

0.893

Multiple sequence alignment